DY260056

Overview
NameDY260056
Unique NameDY260056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length931
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1404 contig Ccv1_Contig1404:1..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_SHIB3 (Adenine phosphoribosyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=apt PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_SHEHH (Adenine phosphoribosyltransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=apt PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 89/170 (52.35%), Postives = 125/170 (73.53%), Query Frame = 3 
Query:   96 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 605
            +A I ++I+ IP++PK GI+F+D+T+LL D +A++ TI L VE YKD+  + V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG DV+E+HV A+ A ++ L++DDL+ATGGT+ A ++L+ ++G  V + A VI LP+L G +RL EK    LVS
Sbjct:    8 LALIKNSIKTIPNYPKEGILFRDVTSLLEDPQAYKLTIGLLVEHYKDQGFTKVVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRETISESYELEYGHDVLEIHVDAINAEDKVLVIDDLLATGGTIEATVKLIRQLGGSVNDAAFVISLPDLGGEQRL-EKMDLKLVS 176
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_MANSM (Adenine phosphoribosyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=apt PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 93/170 (54.71%), Postives = 126/170 (74.12%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRER---LGEKPLFVLVS 605
            I S+I+ IP+ PK GI+F+DIT+L+   +AF+ T+DL V  YK++ I+ V G E+RGFIFG P+ALA+G  FV +RKP+KLP E IS+ Y LEYG+D +EMHV +V+AG+  LI+DDL+ATGGT+ A I+L++R+G  V   A VI LPEL G ER   LG +P F LV+
Sbjct:    8 IKSSIKSIPNHPKEGIIFRDITSLIEVPEAFQATVDLIVGNYKNQGITKVVGTESRGFIFGAPVALALGLPFVLVRKPRKLPRETISQSYQLEYGEDTLEMHVDSVKAGDNVLIIDDLLATGGTVDATIKLIKRLGGDVKHAAFVINLPELGGEERLRSLGVEP-FTLVN 176
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_ESCF3 (Adenine phosphoribosyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=apt PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVTDAAFIINLFDLGGEQRL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_ECOUT (Adenine phosphoribosyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=apt PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_ECOSM (Adenine phosphoribosyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=apt PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_ECOSE (Adenine phosphoribosyltransferase OS=Escherichia coli (strain SE11) GN=apt PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_ECOLU (Adenine phosphoribosyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=apt PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_ECOLI (Adenine phosphoribosyltransferase OS=Escherichia coli (strain K12) GN=apt PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
[Close]
BLAST of DY260056 vs. ExPASy Swiss-Prot
Match: APT_ECOLC (Adenine phosphoribosyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=apt PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = 3 
Query:  105 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 575
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E ISE Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G +RL
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167
The following BLAST results are available for this feature:
BLAST of DY260056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_SHIB32.399e-4453.50Adenine phosphoribosyltransferase OS=Shigella boyd... [more]
APT_SHEHH2.399e-4452.35Adenine phosphoribosyltransferase OS=Shewanella ha... [more]
APT_MANSM2.399e-4454.71Adenine phosphoribosyltransferase OS=Mannheimia su... [more]
APT_ESCF32.399e-4453.50Adenine phosphoribosyltransferase OS=Escherichia f... [more]
APT_ECOUT2.399e-4453.50Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECOSM2.399e-4453.50Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECOSE2.399e-4453.50Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECOLU2.399e-4453.50Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECOLI2.399e-4453.50Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECOLC2.399e-4453.50Adenine phosphoribosyltransferase OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260056 ID=DY260056; Name=DY260056; organism=Citrus clementina; type=EST; length=931bp
CTCACTGACTATTTTCGGCGTTTTGAGTAGTGAGTGGTGACTCCACCCCA
CCTCAACAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGC
TGGGATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGA
TTATGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGA
GATACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGT
TGTTGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCAT
TGGCTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCT
GGGGAGGTTATTTCCGAAGAGTATTCCTTGGAATATGGAAAAGATGTAAT
GGAGATGCATGTAGGTGCTGTACAAGCAGGGGAGCGTGCTTTAATAGTAG
ACGATCTAGTTGCAACTGGTGGGACCTTGTCTGCTGCAATCAGGCTACTT
GAGCGAGTTGGGGTGCATGTGGTTGAGTGTGCATGCGTGATTGAACTGCC
AGAGCTAAAGGGTCGGGAACGGCTGGGAGAGAAACCACTATTTGTTCTTG
TAAGCTAAACTTGACCTCCGGTTATGGTTTAAATGCAATGTTTGTGGACC
ATATGGGTTTCTAGTCGCTCGGGCCTCGCCCCAAGCCTTGAGAACCTTCT
AAAACCATCCGGTAATATAAAAGCAATTTCATTGGCTTTCTATTTTATTT
AACACCTTGGGGAAAGAGTGGTGGGGAAGCCGGGTTCCGTCCGCTATTGT
TGGGTTAAAAAATGAAAGGCCTATGAAAAAATTCCCTCCTCCCCTAAACC
CCCGTATTTGAAGCCTTTTCCAATTACCCGGAAATTCCAACCCAAGGGTT
TGTTGAAGGTTCCCTGGGGTGAATTTAAACC
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