DY260062

Overview
NameDY260062
Unique NameDY260062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1074
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1A_MOUSE (Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.941e-19
Identity = 74/225 (32.89%), Postives = 111/225 (49.33%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK---------PFVVAEPEIPELEVNEGFEP-LVPCSDGLWE 830
            LR G SS +G R  MED +        G +    F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K           V  EPE+ ++E +E  +  ++   DG+W+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFRGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWD 243          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PP2C2_YEAST (Protein phosphatase 2C homolog 2 OS=Saccharomyces cerevisiae GN=PTC2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.941e-19
Identity = 77/218 (35.32%), Postives = 110/218 (50.46%), Query Frame = 3
Query:  228 GYSSFRGKRATMEDFYDIKTSNV---DGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVG---NHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFG------NPLLKP---FVVAEPEIPELEVN-EGFEPLVPCSDGLWE 830
            G  + +G R +MED + ++ + +   D   +  +G+FDGHGG++ AEY    + E L +   F   +   A+ +T+  TDV  L+         G TA T+ILV    N L   N GDSRTV++  G A  LS DHKP    E+ RI  A G V      RV G LA+SRA G      NP L P    V   P+I E  ++ +  E ++   DG+W+
Sbjct:   25 GLCAMQGWRMSMEDSHILEPNVLTKSDKDHIAFYGIFDGHGGAKVAEYCGNKIVEILQEQKSFHEGNLPRALIDTFINTDVKLLQDPVMKEDHSGCTA-TSILVSKSQNLLVCGNAGDSRTVLATDGNAKALSYDHKPTLASEKSRIVAADGFVEMD---RVNGNLALSRAIGDFEFKSNPKLGPEEQIVTCVPDILEHSLDYDRDEFVILACDGIWD 238          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C13_ARATH (Probable protein phosphatase 2C 13 OS=Arabidopsis thaliana GN=At1g48040 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.941e-19
Identity = 67/196 (34.18%), Postives = 101/196 (51.53%), Query Frame = 3
Query:  318 FGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDD------------------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK-PF------VVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            +GVFDGHGG  AA ++KE+L     +   F         E     D  FLE   +++R                    G+TA TA+++G HL VAN GD R V+ + G A+ +S DH+     ER+RIE+ GG   +     + GVLA++RA G+  LK PF      ++++PEI ++ + E  E L+   DG+W+
Sbjct:  117 YGVFDGHGGPEAAIFMKENLTRLFFQDAVF--------PEMPSIVDAFFLEELENSHRKAFALADLAMADETIVSGSCGTTALTALIIGRHLLVANAGDCRAVLCRRGVAVDMSFDHRSTYEPERRRIEDLGG---YFEDGYLNGVLAVTRAIGDWELKNPFTDSSSPLISDPEIGQIILTEDDEFLILACDGIWD 301          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C20_ORYSJ (Probable protein phosphatase 2C 20 OS=Oryza sativa subsp. japonica GN=Os02g0600000 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.535e-19
Identity = 82/306 (26.80%), Postives = 131/306 (42.81%), Query Frame = 3
Query:   84 NREFRKSSKMMVDSAAKRGPIVDVLPEKEDDGGYVSGGWKSEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRD----------------------------------DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVM----------WAGTWRVG-----GVLAMSRAFG------NPLLKP---FVVAEPEIPELEVNEGFEPLVPCSDGLW 827
            +RE R  S+    SA +R  + + LP +           + E+ +++   SS +G    MED +     N+D      FGV+DGHGG+  A Y  +     L  H  + ++   A+   +   D D   S  D +R+                                  +GSTA   ++ G+ L V + GDSR V+S+ G+A  LS DHKP    ER+R++NAGGV +          W    + G     G +++SR+ G      N  L P    +   P+I  +++ +  E LV  ++GLW
Sbjct:   30 SRERRSDSRDASGSAKQRSAMGNSLPVESKFTD------EKENDRIKYVVSSMQGWGEKMEDAH-AAILNLDDTMTSFFGVYDGHGGAEVASYCAKRFHIELCNHEDYDSNLSNAMRSAFYSMDEDLQLS--DAWRELVIPRNNGWMYFIKAGVCANLSPFPQATYTAPSYEGSTACVVVIRGDQLIVGHAGDSRCVLSRNGQASALSVDHKPDSESERERVQNAGGVAVGYSYRKIMGRWVTKKQWGFTDFKGRVSISRSIGDFACKKNERLPPEDQMLTCNPDILTMDITDDMEFLVIATEGLW 326          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1K_PONAB (Protein phosphatase 1K, mitochondrial OS=Pongo abelii GN=PPM1K PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.648e-19
Identity = 71/192 (36.98%), Postives = 98/192 (51.04%), Query Frame = 3
Query:  228 GYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHL----FENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMW--AGTWRVGGVLAMSRAFGNPLLKPF-VVAEPEIPELE 779
            G +S  GKR   ED +D      +   V  F V+DGHGG  AA++   H+     + L K     T   LA  E  +        S   T    G+TA+ A+L  G  L VA+VGDSR ++ + GK + L+ DH P R DE++RI+  GG V W   G   V G LAM+R+ G+  LK   V+AEPE   ++
Sbjct:   96 GCASQIGKRKENEDRFDFAQLTDE---VLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIK 284          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1K_BOVIN (Protein phosphatase 1K, mitochondrial OS=Bos taurus GN=PPM1K PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.648e-19
Identity = 70/208 (33.65%), Postives = 109/208 (52.40%), Query Frame = 3
Query:  228 GYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLE----SERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMW--AGTWRVGGVLAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEP-LVPCSDGL 824
            G +S  GKR   ED +       +   V  F V+DGHGG  AA++   H+ + +L       + +  ++  + + D  F      S   T    G+TA+ A+L  G  L +A+VGDSR ++ + GK + L+ DH P R DE++RI+  GG V W   G   V G LAM+R+ G+  LK   V+AEPE   ++++   +  LV  +DG+
Sbjct:   96 GSASQIGKRKENEDRFGFAQLTNE---VLYFAVYDGHGGPAAADFCHTHMEKCILDLLPKEENLETVLTLAFLEIDKTFARHAHLSADATLLTSGTTATVALLRDGIELVIASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSLGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGI 300          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PP2C_LEICH (Protein phosphatase 2C OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.376e-19
Identity = 69/173 (39.88%), Postives = 94/173 (54.34%), Query Frame = 3
Query:  222 RCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTAS--TAILVGN--HLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN 728
            RCG +   G R TMED +    ++  G     FGVFDGH   + ++YL+      + K    MTD ++   E   + D ++++S R+     GST +   A+  GN  HL V NVGDSR V    G  +PL+EDHKP+   ER+RIEN  G V      RV G LA+SRAFG+
Sbjct:   23 RCGSNCVNGYRETMEDAHLTYLTDSWG----FFGVFDGHVNDQCSQYLERAWRSAIEKESIPMTDERM--KELALRIDQEWMDSGRE----GGSTGTFFVALKEGNKVHLQVGNVGDSRVVACIDGVCVPLTEDHKPNNEGERQRIENCAGRV---ENNRVDGSLAVSRAFGD 182          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C02_ORYSJ (Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.376e-19
Identity = 72/228 (31.58%), Postives = 110/228 (48.25%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFY---DIKTSNVDGQAVC-----MFGVFDGHGGSRAAEYLKEH---LFENLLKHPQ-------FMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK------PFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            +R G  +  G R  MED +   D  + ++    +C      +GVFDGHGG  AA Y+K H   LF    + PQ       F    + +I   +   D+  L  +    R  G+TA  A++ G  L VAN GD R V+ + G A+ +S DH+P    E +RI   GG +       + GVL+++RA G+  +K        ++AEPE  +  + E  E L+   DG+W+
Sbjct:   68 IRSGSFADIGPRRYMEDEHIRIDDLSGHLGSLLMCPAPNAFYGVFDGHGGPDAAAYMKRHAIRLFFEDSEFPQALEEDESFYESVEKSIHNAFLSADLA-LADDLAISRSSGTTALAALIFGRQLLVANAGDCRAVLCRKGVAVEMSRDHRPTYDAEHERITECGGYI---EDGYLNGVLSVTRALGDWDMKMPQGSRSPLIAEPEFQQTTLTEDDEFLIIGCDGIWD 291          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1K_MOUSE (Protein phosphatase 1K, mitochondrial OS=Mus musculus GN=Ppm1k PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.633e-19
Identity = 70/208 (33.65%), Postives = 108/208 (51.92%), Query Frame = 3
Query:  228 GYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLE----SERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMW--AGTWRVGGVLAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEP-LVPCSDGL 824
            G +S  GKR   ED +         + V  F V+DGHGG  AA++   H+ + ++       D +  ++  + + D  F      S   +    G+TA+ A+L  G  L VA+VGDSR ++ + GK + L+ DH P R DE++RI+  GG V W   G   V G LAM+R+ G+  LK   V+AEPE   +++    +  LV  +DG+
Sbjct:   96 GCASLIGKRKENEDRFGFAQLT---EEVLYFAVYDGHGGPAAADFCHTHMEKCVMDLLPREKDLETVLTLAFLEIDKAFASYAHLSADASLLTSGTTATVALLRDGVELVVASVGDSRALLCRKGKPMKLTTDHTPERKDEKERIKKFGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKASGVIAEPETTRIKLYHADDSFLVLTTDGI 300          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C67_ORYSJ (Probable protein phosphatase 2C 67 OS=Oryza sativa subsp. japonica GN=Os09g0314400 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.146e-18
Identity = 70/220 (31.82%), Postives = 109/220 (49.55%), Query Frame = 3
Query:  243 RGKRATMEDFY----DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKH--PQFMTDTKL---AISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAG---------------KAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEPLVPCSDGLW 827
            +G R TMED +    D    +        F ++DGHGG  AAEY ++HL +N++    P+ + D K    AI E +++TD   L+        DG+TA    ++G  + VAN GD++ V++++                KAI L+ +HK     ER RI+ AGG V   G  R+ G + +SRA G+   K   ++A P++   EV      ++   DGLW
Sbjct:   98 KGCRHTMEDAWVLLPDASMESPGNLRCAHFAIYDGHGGRLAAEYAQKHLHQNVIAAGLPRELMDVKAAKKAIIEGFRRTDECLLQESTKGNWQDGATAVCVWVLGQTVVVANAGDAKAVLARSTSADGEGAVDDAKSQLKAIVLTREHKAIFPQERARIQKAGGSVGPNG--RLQGRIEVSRALGDRQFKKVGLIATPDVHSFEVTRKDHFIILGCDGLW 315          
The following BLAST results are available for this feature:
BLAST of DY260062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PPM1A_MOUSE1.941e-1932.89Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE... [more]
PP2C2_YEAST1.941e-1935.32Protein phosphatase 2C homolog 2 OS=Saccharomyces ... [more]
P2C13_ARATH1.941e-1934.18Probable protein phosphatase 2C 13 OS=Arabidopsis ... [more]
P2C20_ORYSJ2.535e-1926.80Probable protein phosphatase 2C 20 OS=Oryza sativa... [more]
PPM1K_PONAB5.648e-1936.98Protein phosphatase 1K, mitochondrial OS=Pongo abe... [more]
PPM1K_BOVIN5.648e-1933.65Protein phosphatase 1K, mitochondrial OS=Bos tauru... [more]
PP2C_LEICH7.376e-1939.88Protein phosphatase 2C OS=Leishmania chagasi PE=2 ... [more]
P2C02_ORYSJ7.376e-1931.58Probable protein phosphatase 2C 2 OS=Oryza sativa ... [more]
PPM1K_MOUSE9.633e-1933.65Protein phosphatase 1K, mitochondrial OS=Mus muscu... [more]
P2C67_ORYSJ2.146e-1831.82Probable protein phosphatase 2C 67 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260062 ID=DY260062; Name=DY260062; organism=Citrus clementina; type=EST; length=1074bp
TTGGATCGTTTACTAGAACCAGGCTGGAATTAAGCAACATAAACAAGAGT
TTGCATGCGGGTCTTCCTGTAGGCTATACTTGGAATCGAGAATTTAGAAA
GAGCTCCAAGATGATGGTTGATTCGGCAGCGAAGCGGGGACCCATTGTCG
ATGTATTACCCGAGAAAGAGGATGACGGTGGTTATGTCAGCGGAGGGTGG
AAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGAAA
GAGGGCCACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGATG
GGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCCGT
GCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCATCC
ACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACAGA
CTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATGGT
TCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCCAA
TGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCCTC
TTTCTGAGGATCATAAACCCCACAGATGTGATGAGCGGAAGAGAATTGAA
AATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGTGT
GCTAGCCATGTCTCGTGCTTTTGGTAACCCGCTGCTGAAACCATTTGTCG
TTGCGGAACCTGAGATCCCGGAACTTGAAGTAAATGAAGGATTTGAGCCG
CTTGTGCCTTGCAGTGATGGACTATGGGAATGAGTACCCCATGGAAGATG
CCGGTTGCCCTTGCCCCAACCAGGGGAAAAACCCGAAATCCCCCCCTCGG
AAGTTAACCGAAACCGCCTTTTCCCCCAGGCCGTGGCGGACCACCAAAAC
GTGCTTGGTAGGGGAATTCCCCCCCCTCCCATGGAAAACCCCCCCCAAAC
CCGAATGGGGACCGGGGGTAGGAAATCCCCCTTTTGGGTTGCCGGGGGGC
GAGGGTTTTACCCCCCCCCTTTCG
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