DY260062

Overview
NameDY260062
Unique NameDY260062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1074
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C17_ORYSJ (Probable protein phosphatase 2C 17 OS=Oryza sativa subsp. japonica GN=Os02g0599150 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.426e-16
Identity = 75/259 (28.96%), Postives = 115/259 (44.40%), Query Frame = 3
Query:  198 WKSEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTD-------TKLAISETYQQTD-------------VDFLES-------ERDTYRD---DGSTASTAILVGNHLYVANVGDSRTVISK-AGKAIPLSEDHKP--HRCDERKRIENAGGVVMWAGTWRV----------------GGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLW 827
            ++ E+ +++   SS +G    MED +    +  D  +   FGV+DGHGG+  A Y  +     L  H  +  D         L++ E  QQ+D             + FL++        + TY     +GSTA   ++ GN + V +VGDSR V+S+  G AI LS DHKP      ER+R++NAGG  +     +V                GG  A  +       K  +V +P+I   ++ +  E LV  S GLW
Sbjct:   37 FEEENDRIKYVVSSMQGWGEKMEDAHAAILNLDDTTSTSFFGVYDGHGGAEVALYCAKQFHIELCNHEDYHNDLINALDNVFLSMDENLQQSDAWRELVIPHDNGCMYFLKAGVCAKPFPQATYTGPAYEGSTACVVVIRGNQMIVGHVGDSRCVLSRQGGLAIDLSFDHKPCTRTESERERVQNAGGRSLGLRCEQVMGNYVVKEQWVLGDFGGGDFAFKKNKDLDREKQMLVCDPDILADDITDDMEFLVIASQGLW 295          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C19_ARATH (Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein OS=Arabidopsis thaliana GN=At2g20050 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.302e-15
Identity = 75/246 (30.49%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  216 KLRCGYSSFRGKRATM-----EDFYDIKTSNVDGQAVCMFGVFDGHG--GSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGK----AIPLSEDHKPHRCDERKRIENAGGVVM---------------WAGT-----------WRVGGV---LAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            +LRC + S RG          +D + I T          FGVFDGHG  G++ ++++K  L ENLL+H +F  D   A +  +  T+   L ++       G+TA T ++ G  +YVAN GDSR V+++       A+ LS D  P R DE +R++  G  V+               W GT           W   G+    A +R+ G+ + +   VVA PEI  +E+       V  SDG++E
Sbjct:  105 ELRCSFLSQRGYYPDALDKANQDSFAIHTPFGSNSDDHFFGVFDGHGEFGAQCSQFVKRRLCENLLRHGRFRVDPAEACNSAFLTTNSQ-LHADLVDDSMSGTTAITVMVRGRTIYVANAGDSRAVLAEKRDGDLVAVDLSIDQTPFRPDELERVKLCGARVLTLDQIEGLKNPDVQCW-GTEEDDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIAVVELTPDNPFFVVASDGVFE 348          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C41_ARATH (Probable protein phosphatase 2C 41 OS=Arabidopsis thaliana GN=At3g16800 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.901e-15
Identity = 80/278 (28.78%), Postives = 127/278 (45.68%), Query Frame = 3
Query:   96 RKSSKMMVDSAAKRGPIVDVLPEKEDDGGYVSGGWKSEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHG--GSRAAEYLKEHLFENLLKHPQFMTDT--------------KLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGK------AIPLSEDHKPHRCDERKRIENAGGVVMW----AGTWRVGGV------LAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            R+ +K M+  + K   ++          G+VS    SE  K      S RG++   +D   +       + +   G+FDGHG  G   A+ +K+    +LL   Q    +              K A  +T+   D+D   S        G TA TA+L G+HL +AN GDSR VI+           + LS D KP+  +E +RI+ + G +       G +RVG        LA+SRAFG+  LK F +V+EPE+   ++ +  + L+  +DG+W+
Sbjct:   31 REIAKSMIKDSKKNSTLLGT-------SGFVS----SESSKRFTSICSNRGEKGINQDRAIVWEGFGCQEDITFCGMFDGHGPWGHVIAKRVKKSFPSSLLCQWQQTLASLSSSPECSSPFDLWKQACLKTFSIIDLDLKISPSIDSYCSGCTALTAVLQGDHLVIANAGDSRAVIATTSDDGNGLVPVQLSVDFKPNIPEEAERIKQSDGRLFCLDDEPGVYRVGMPNGGSLGLAVSRAFGDYCLKDFGLVSEPEVTYRKITDKDQFLILATDGMWD 297          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.901e-15
Identity = 73/259 (28.19%), Postives = 115/259 (44.40%), Query Frame = 3
Query:  198 WKSEDGKLRCGYSSFRGKRAT--MEDFYDIKTSNVD----GQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTD----TKLAISETYQQTDVDFLESERDTYR------DDGSTASTAILVGNHLYVANVGDSRTVIS------KAGKAIPLSEDHKPHRCDERKRIENAGG-----VVMWAGTWRVGGVLAMSRAFGN-----------PLL----------KPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            W  + G    G  S    +A   +ED   +++  V     G      GV+DGHGG  AA ++ +HLF+N+ K   F ++    +   I++ +  T+ DFL   R  ++        G+     I+    LY+AN GDSR V+       K  KA+ LS +H       R+ + +        VV+    WRV G++ +SR+ G+           PLL          KP + AEP I   +++   + L+  SDGLWE
Sbjct:   38 WYKDSGNHVAGEFSMSVIQANNLLEDHSKLESGPVSMFDSGPQATFVGVYDGHGGPEAARFVNKHLFDNIRK---FTSENHGMSANVITKAFLATEEDFLSLVRRQWQIKPQIASVGACCLVGIICSGLLYIANAGDSRVVLGRLEKAFKIVKAVQLSSEHNASLESVREELRSLHPNDPQIVVLKHKVWRVKGIIQVSRSIGDAYLKKAEFNREPLLAKFRVPEVFHKPILRAEPAITVHKIHPEDQFLIFASDGLWE 293          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C43_ORYSJ (Probable protein phosphatase 2C 43 OS=Oryza sativa subsp. japonica GN=Os04g0584366 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.788e-15
Identity = 75/272 (27.57%), Postives = 123/272 (45.22%), Query Frame = 3
Query:  156 LPEKEDDGGYVSGG-------WKSEDGKLRCGYSSFRGKRAT--MEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFM-TDTKLAISETYQQTDVDFLESERDTYRDDGSTAS--TAILVG----NHLYVANVGDSRTVI-----SKAGKAIPLSEDHKPHRCDERKRI-----ENAGGVVMWAGTWRVGGVLAMSRAFGN---------------------PLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            L  ++++ G  SGG       W  +  +   G  SF   +A   +ED   ++T    G A    GV+DGHGG+ A+ ++  HL  +L++  Q   T ++  +   +  T+  FL   R T+    S AS  +  LVG      LY+AN+GDSR V+     S    A  L+ DH     + R+ +     +++  VV+  G WR+ G++ +SR+ G+                     PL +P + +EP I    ++      +  SDGLWE
Sbjct:   21 LTRRDEEDGSGSGGDADDLLLWSRDLVRHAAGEFSFAVVQANDVLEDHSQVET----GAAATFIGVYDGHGGAEASRFISNHLAAHLVRLAQERGTISEDIVRNAFSATEEGFLSLVRRTHLIKPSIASIGSCCLVGIIWKGTLYLANLGDSRAVVGCLTGSNKIVAEQLTRDHNASMEEVRQELRSLHPDDSQIVVLKNGVWRIKGIIQVSRSIGDAYLKKQEFALDPSMTRFHLSEPLRRPVLTSEPSIYTRVLHSQDSFFIFASDGLWE 288          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C42_ARATH (Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.948e-15
Identity = 79/282 (28.01%), Postives = 120/282 (42.55%), Query Frame = 3
Query:  138 GPIVDVLPEKEDDGGYVSGG----------WKSEDGKLRCGYSSFRGKRAT--MEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENL--LKHPQFMTDTKLAISETYQQTDVDFLESERDTYRD--DGSTASTAILVG----NHLYVANVGDSRTVISKAG-----KAIPLSEDHKPHRCDERKRIENAGG-----VVMWAGTWRVGGVLAMSRAFGN---------------------PLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            G + D        GG VSGG          W  + GK   G  S    +A   +ED   +++ N         GV+DGHGG  AA Y+ +HLF +   +        T+  I   +  T+  F     + +++  + +T  T  LVG    N L+VA++GDSR V+ K G      AI LS +H  +  D R  +++        VV   G WRV G++ +SR+ G+                     P+ +P + A P I    ++     L+  SDGLWE
Sbjct:   17 GHVCDNSEAGSGGGGGVSGGTGGEGKDGLLWFRDLGKYCGGDFSMAVIQANQVLEDQSQVESGNFG----TFVGVYDGHGGPEAARYVCDHLFNHFREISAETQGVVTRETIERAFHATEEGFASIVSELWQEIPNLATVGTCCLVGVIYQNTLFVASLGDSRVVLGKKGNCGGLSAIQLSTEHNANNEDIRWELKDLHPDDPQIVVFRHGVWRVKGIIQVSRSIGDMYMKRPEFNKEPISQKFRIAEPMKRPLMSATPTILSHPLHPNDSFLIFASDGLWE 294          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C48_ARATH (Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.462e-15
Identity = 74/273 (27.11%), Postives = 119/273 (43.59%), Query Frame = 3
Query:  150 DVLPEKEDDGGYVSGG-WKSEDGKLRCGYSSFRGKRAT--MEDFYDIKTSNVD----GQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTD-TKLAISETYQQTDVDFLESERDTYRDDGSTAS------TAILVGNHLYVANVGDSRTVISKAG------KAIPLSEDHKPHRCDERKRI-----ENAGGVVMWAGTWRVGGVLAMSRAFGN-----------PLL----------KPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            D  P  +D  G + G  W  + G    G  S    +A   +ED   +++  +     G      GV+DGHGG  AA ++ + LF N+ ++       +   I+  +  T+ +FL   ++ ++     AS        I+    LYVAN GDSR V+ K        KA+ LS +H       R+ +     ++   VV+    WRV G++ +SR+ G+           PLL          KP + AEP I   +++   + L+  SDGLWE
Sbjct:   22 DSSPGSDDTNGRLDGLLWYKDSGNHITGEFSMAVVQANNLLEDHSQLESGPISLHESGPEATFVGVYDGHGGPEAARFVNDRLFYNIKRYTSEQRGMSPDVITRGFVATEEEFLGLVQEQWKTKPQIASVGACCLVGIVCNGLLYVANAGDSRVVLGKVANPFKELKAVQLSTEHNASIESVREELRLLHPDDPNIVVLKHKVWRVKGIIQVSRSIGDAYLKRAEFNQEPLLPKFRVPERFEKPIMRAEPTITVHKIHPEDQFLIFASDGLWE 294          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C46_ARATH (Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.880e-14
Identity = 57/209 (27.27%), Postives = 95/209 (45.45%), Query Frame = 3
Query:  321 GVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKL-AISETYQQTDVDFLESERDTYRDD------GSTASTAILVGNHLYVANVGDSRTVISKAGK------AIPLSEDHKPHRCDERKRI-----ENAGGVVMWAGTWRVGGVLAMSRAFGN---------------------PLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            G++DGHGG   + ++ +HLF++L +         +  I + Y+ T+  FL      +         GS     ++ G  LY+ANVGDSR V+ +A K      A+ LS +H       R+ +     +++  V++    WRV G++ +SR+ G+                     P  +P +  EP I E E+    + L+  SDGLWE
Sbjct:   81 GIYDGHGGPETSRFVNDHLFQHLKRFAAEQASMSVDVIKKAYEATEEGFLGVVTKQWPTKPQIAAVGSCCLVGVICGGMLYIANVGDSRAVLGRAMKATGEVIALQLSAEHNVSIESVRQEMHSLHPDDSHIVMLKHNVWRVKGLIQISRSIGDVYLKKAEFNKEPLYTKYRIREPFKRPILSGEPTITEHEIQPQDKFLIFASDGLWE 289          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C15_ORYSJ (Probable protein phosphatase 2C 15 OS=Oryza sativa subsp. japonica GN=Os02g0567200 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.880e-14
Identity = 59/196 (30.10%), Postives = 95/196 (48.47%), Query Frame = 3
Query:  294 VDGQAVCMFGVFDGHGGSRAAEYLKEHLFENL-------LKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHK-PHRCDERKRIENAGGVV---MWAGTWRVG------GVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            V   +   FG+FDGH G+ AA Y KE+L  N+       L    ++     A+   + +TD DF    +   R  G+T +  I+ G  + VA+VGDSR V+   G    LS DH+     +E  R+  +GG V      G   +G      G L +SR+ G+  +  F+V  P + +++++     L+  SDG+W+
Sbjct:   68 VPSSSFSAFGLFDGHNGNGAAIYTKENLLSNILTAIPADLNREDWLAALPRAMVAAFVKTDKDF----QTKARSSGTTVTFVIIDGLFITVASVGDSRCVLEAEGSIYHLSADHRFDASKEEVDRVTESGGDVGRLNVVGGAEIGPLRCWPGGLCLSRSIGDQDVGQFIVPVPYVKQVKLSTAGGRLIISSDGVWD 259          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C40_ORYSJ (Probable protein phosphatase 2C 40 OS=Oryza sativa subsp. japonica GN=Os04g0449400 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 3.207e-14
Identity = 70/269 (26.02%), Postives = 119/269 (44.24%), Query Frame = 3
Query:  300 GQAVCMFGVFDGHGGSRAAEYLKEHLFENL-------LKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDER-KRIENAGGVV---MWAGTWRVG------GVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE*VPHG---RCRLPLPQPGEKPEIPPSEVNRNRLFPQAVADHQNVLGRGIPPPPMENP---PQTRMGTGGRKSPFW 1037
            G     F +FDGH GS AA Y KE++  N+       L   +++     A+   + +TD DF    +      G+T +  I+ G  + VA+VGDSR V+   G    LS DH+    +E   R+   GG V      G   +G      G L +SR+ G+  +  F++  P + +++++     ++  SDG+W+ +       C   LP     PE    ++ +  +  + + D    +   I PP   +P   P  + G G  K+ F+
Sbjct:   88 GAPFSAFALFDGHNGSGAAVYAKENILSNVMCCVPADLSGDEWLAALPRALVAGFVKTDKDF----QTRAHSSGTTVTFVIIDGYVVTVASVGDSRCVLEAEGTIYHLSADHRFDASEEEVGRVTECGGEVGRLNVVGGAEIGPLRCWPGGLCLSRSIGDQDVGEFIIPVPYVKQIKLSSAGGRIIISSDGVWDALTVDTAFSCARGLP-----PEAAADQIVKEAIASKGLRDDTTCIVIDIIPPEKISPTVQPAKKAGKGLFKNIFY 347          
The following BLAST results are available for this feature:
BLAST of DY260062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
P2C17_ORYSJ3.426e-1628.96Probable protein phosphatase 2C 17 OS=Oryza sativa... [more]
P2C19_ARATH1.302e-1530.49Protein phosphatase 2C and cyclic nucleotide-bindi... [more]
P2C41_ARATH2.901e-1528.78Probable protein phosphatase 2C 41 OS=Arabidopsis ... [more]
P2C38_ARATH2.901e-1528.19Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
P2C43_ORYSJ3.788e-1527.57Probable protein phosphatase 2C 43 OS=Oryza sativa... [more]
P2C42_ARATH4.948e-1528.01Probable protein phosphatase 2C 42 OS=Arabidopsis ... [more]
P2C48_ARATH6.462e-1527.11Probable protein phosphatase 2C 48 OS=Arabidopsis ... [more]
P2C46_ARATH1.880e-1427.27Probable protein phosphatase 2C 46 OS=Arabidopsis ... [more]
P2C15_ORYSJ1.880e-1430.10Probable protein phosphatase 2C 15 OS=Oryza sativa... [more]
P2C40_ORYSJ3.207e-1426.02Probable protein phosphatase 2C 40 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260062 ID=DY260062; Name=DY260062; organism=Citrus clementina; type=EST; length=1074bp
TTGGATCGTTTACTAGAACCAGGCTGGAATTAAGCAACATAAACAAGAGT
TTGCATGCGGGTCTTCCTGTAGGCTATACTTGGAATCGAGAATTTAGAAA
GAGCTCCAAGATGATGGTTGATTCGGCAGCGAAGCGGGGACCCATTGTCG
ATGTATTACCCGAGAAAGAGGATGACGGTGGTTATGTCAGCGGAGGGTGG
AAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGAAA
GAGGGCCACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGATG
GGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCCGT
GCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCATCC
ACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACAGA
CTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATGGT
TCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCCAA
TGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCCTC
TTTCTGAGGATCATAAACCCCACAGATGTGATGAGCGGAAGAGAATTGAA
AATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGTGT
GCTAGCCATGTCTCGTGCTTTTGGTAACCCGCTGCTGAAACCATTTGTCG
TTGCGGAACCTGAGATCCCGGAACTTGAAGTAAATGAAGGATTTGAGCCG
CTTGTGCCTTGCAGTGATGGACTATGGGAATGAGTACCCCATGGAAGATG
CCGGTTGCCCTTGCCCCAACCAGGGGAAAAACCCGAAATCCCCCCCTCGG
AAGTTAACCGAAACCGCCTTTTCCCCCAGGCCGTGGCGGACCACCAAAAC
GTGCTTGGTAGGGGAATTCCCCCCCCTCCCATGGAAAACCCCCCCCAAAC
CCGAATGGGGACCGGGGGTAGGAAATCCCCCTTTTGGGTTGCCGGGGGGC
GAGGGTTTTACCCCCCCCCTTTCG
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