DY260062

Overview
NameDY260062
Unique NameDY260062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1074
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C05_ORYSJ (Probable protein phosphatase 2C 5 OS=Oryza sativa subsp. japonica GN=Os01g0552300 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.490e-11
Identity = 66/255 (25.88%), Postives = 114/255 (44.71%), Query Frame = 3
Query:  204 SEDGKLRCGYSSFRGKRATMEDFYDIKTSNV-DGQAVCMFGVFDGHGGSRAAEYLKEHLFENL-----------LKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDS-RTVISKAGKAIPLSEDHKPH-----RCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK----------------------------PFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            SE   +R G +  +G R  MED   ++  ++ DG +     VFDGH G  A E+L++ L++              K+   +TD+      T       +LE + D   + G+TA+   L  + L V+++GDS   V+S+ G+   ++  H+P+       +E KRI  AGG   W    R+ G +++SRAFG+   K                              +V+ P++  +E+    E ++  +DGLW+
Sbjct:   51 SELEAIRWGTAKLQGARDEMEDEVVLRPGSLLDGFSFA--AVFDGHAGFSAVEFLRDELYKECAAALDGGAVLSTKNLDAITDSIQRAFATVDANLSTWLE-QMDKEDESGATATAMFLRNDVLVVSHIGDSCLQVVSRGGRPQAVTNFHRPYGNKKASLEEVKRIRAAGG---WIVDGRICGEISVSRAFGDIRFKTRKNEMLVKGVKEGRWTEKFISRINFKGDLIVSSPDVSLVELGPDVEFVLLATDGLWD 299          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C53_ARATH (Putative protein phosphatase 2C 53 OS=Arabidopsis thaliana GN=At4g08260 PE=5 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.946e-11
Identity = 56/194 (28.87%), Postives = 86/194 (44.33%), Query Frame = 3
Query:  261 MEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKA----GKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            MED +   T+        +FGV+ GHGG +AAE+  ++L +N+++                +  D  FL+ E       GS+  TA++    L V+N GD R V+S      GK +   ED                 +++    WR+ G L + R  G+  LK +V+AEPE     V    E L+  S GLW+
Sbjct:    1 MEDRFSAITNLHGDHKQAIFGVYVGHGGVKAAEFAAKNLDKNIVE----------------EVVDATFLKEEGFK---GGSSCVTALVSEGSLVVSNAGDCRAVMSVGEMMNGKELKPRED-----------------MLIRFTLWRIQGSLVVPRGIGDAQLKKWVIAEPETKISRVEHDHEFLILASHGLWD 158          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C64_ORYSJ (Probable protein phosphatase 2C 64 OS=Oryza sativa subsp. japonica GN=Os07g0566200 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.334e-11
Identity = 74/253 (29.25%), Postives = 113/253 (44.66%), Query Frame = 3
Query:  165 KEDDGGYVSGGWKSEDGKLRCG--YSSFRGKRATMED---FYDIKTSNVDGQAVCMFGVFDGHG--GSRAAEYLKEHLFENLLKHPQFM------TDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGK------AIPLSEDHKPHRCDERKRIENAGGVV-----------MWAGTWRVGGVLAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            +ED  G V G   S DG+ R    Y+  +G++   +D    +D      DG    + GVFDGHG  G   A  +++ L   L+   +           + A +  Y+  D D            GSTA T + +G+ LY+AN+GDSR V+           A+ L+ D KP    E +RI+   G V           +W       G LAM+RAFG+  LK + V++ PE     + E  + ++  SDG+W+
Sbjct:   33 REDQLGMVPGRIFSNDGRSRTATVYTQ-QGRKGINQDAMLVWDGFGGEDDG---VLCGVFDGHGPHGHVVARRVRDSLPLRLMSAARDSGADMPAAAWRKAFARAYKAMDKDLRSHPSLDCFCSGSTAVTVLKLGSDLYMANIGDSRAVLGSREATGGGMVAVQLTVDLKPDVPSEAERIKKCRGRVFALQDEPEVPRVWLPFDDAPG-LAMARAFGDFCLKDYGVISVPEFFHWSLTEKDQFVILASDGVWD 280          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: YR307_MIMIV (PP2C-like domain-containing protein R307 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R307 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.661e-11
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  534 HLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAG-------GVVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            ++ V N+GD R V+ K G AIPL++DHKP   DE++RI+           +   AG WR+G  L++SR+FG+    P+V   P++ + ++    E ++   DG+W+
Sbjct:    8 NIQVINIGDCRAVLCKNGLAIPLNKDHKPIWPDEKRRIDRVNEKYETNEKIHFDAGDWRIGD-LSVSRSFGDLDNTPYVTHVPDLFDYQLQSDDEFIIMACDGVWD 112          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1D_MOUSE (Protein phosphatase 1D OS=Mus musculus GN=Ppm1d PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.393e-11
Identity = 67/226 (29.65%), Postives = 99/226 (43.81%), Query Frame = 3
Query:  306 AVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTK-----------LAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAG-------KAIPLSEDHKPHRCDERKRIENAGGVVM---------W-------AGTWRVGGV------LAMSRAFGNPLLKPF----VVAEPEIPELEVN----EGFEPLVPCSDGLWE*VP 839
            +V  F V DGHGG  AA++ +EHL+  + K   F +              LA      +   ++ ++        G+TAS  I+ G  +YVA+VGDS  V+           +A+ +++DHKP    ER+RIE  GG VM         W       +G  R   V      LA++RA G+     F     V  PE P+  V+       + ++  SDGLW  VP
Sbjct:   90 SVAFFAVCDGHGGREAAQFAREHLWGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLAEWPKTMTGLPSTSGTTASVVIIRGMKMYVAHVGDSGVVLGIQDDPKDDFVRAVEVTQDHKPELPKERERIEGLGGSVMNKSGVNRVVWKRPRLTHSGPVRRSTVIDQIPFLAVARALGDLWSYDFFSGKFVVSPE-PDTSVHTLDPRKHKYIILGSDGLWNMVP 314          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1D_HUMAN (Protein phosphatase 1D OS=Homo sapiens GN=PPM1D PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.393e-11
Identity = 67/226 (29.65%), Postives = 101/226 (44.69%), Query Frame = 3
Query:  306 AVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTK-----------LAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAG-------KAIPLSEDHKPHRCDERKRIENAGGVVM-WAGTWRV----------GGV-----------LAMSRAFGNPLLKPF----VVAEPEIPELEVN----EGFEPLVPCSDGLWE*VP 839
            +V  F V DGHGG  AA++ +EHL+  + K   F +              LA      +   ++ ++        G+TAS  I+ G  +YVA+VGDS  V+           +A+ +++DHKP    ER+RIE  GG VM  +G  RV          G V           LA++RA G+     F     V  PE P+  V+    +  + ++  SDGLW  +P
Sbjct:   97 SVAFFAVCDGHGGREAAQFAREHLWGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLAEWPKTMTGLPSTSGTTASVVIIRGMKMYVAHVGDSGVVLGIQDDPKDDFVRAVEVTQDHKPELPKERERIEGLGGSVMNKSGVNRVVWKRPRLTHNGPVRRSTVIDQIPFLAVARALGDLWSYDFFSGEFVVSPE-PDTSVHTLDPQKHKYIILGSDGLWNMIP 321          
The following BLAST results are available for this feature:
BLAST of DY260062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
P2C05_ORYSJ1.490e-1125.88Probable protein phosphatase 2C 5 OS=Oryza sativa ... [more]
P2C53_ARATH1.946e-1128.87Putative protein phosphatase 2C 53 OS=Arabidopsis ... [more]
P2C64_ORYSJ4.334e-1129.25Probable protein phosphatase 2C 64 OS=Oryza sativa... [more]
YR307_MIMIV5.661e-1134.91PP2C-like domain-containing protein R307 OS=Acanth... [more]
PPM1D_MOUSE7.393e-1129.65Protein phosphatase 1D OS=Mus musculus GN=Ppm1d PE... [more]
PPM1D_HUMAN7.393e-1129.65Protein phosphatase 1D OS=Homo sapiens GN=PPM1D PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YC07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260062 ID=DY260062; Name=DY260062; organism=Citrus clementina; type=EST; length=1074bp
TTGGATCGTTTACTAGAACCAGGCTGGAATTAAGCAACATAAACAAGAGT
TTGCATGCGGGTCTTCCTGTAGGCTATACTTGGAATCGAGAATTTAGAAA
GAGCTCCAAGATGATGGTTGATTCGGCAGCGAAGCGGGGACCCATTGTCG
ATGTATTACCCGAGAAAGAGGATGACGGTGGTTATGTCAGCGGAGGGTGG
AAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGAAA
GAGGGCCACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGATG
GGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCCGT
GCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCATCC
ACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACAGA
CTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATGGT
TCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCCAA
TGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCCTC
TTTCTGAGGATCATAAACCCCACAGATGTGATGAGCGGAAGAGAATTGAA
AATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGTGT
GCTAGCCATGTCTCGTGCTTTTGGTAACCCGCTGCTGAAACCATTTGTCG
TTGCGGAACCTGAGATCCCGGAACTTGAAGTAAATGAAGGATTTGAGCCG
CTTGTGCCTTGCAGTGATGGACTATGGGAATGAGTACCCCATGGAAGATG
CCGGTTGCCCTTGCCCCAACCAGGGGAAAAACCCGAAATCCCCCCCTCGG
AAGTTAACCGAAACCGCCTTTTCCCCCAGGCCGTGGCGGACCACCAAAAC
GTGCTTGGTAGGGGAATTCCCCCCCCTCCCATGGAAAACCCCCCCCAAAC
CCGAATGGGGACCGGGGGTAGGAAATCCCCCTTTTGGGTTGCCGGGGGGC
GAGGGTTTTACCCCCCCCCTTTCG
back to top