DY260062

Overview
NameDY260062
Unique NameDY260062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1074
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C30_ARATH (Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.444e-30
Identity = 85/206 (41.26%), Postives = 111/206 (53.88%), Query Frame = 3
Query:  243 RGKRATMEDFYDIKTSNVD--GQAVCMFGVFDGHGGSRAAEYLKEHLFENL------LKHPQFMTDTKLAISETYQQTDVDFL-ESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWA-GTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            RG+R  MED Y       D  G     FGVFDGHGGS+AAE+   +L  N+       +  +     + AI E Y +TD DFL E  R      G+   TA++    L V+N GD R V+S+ G A  L+ DH P + +E KRIE  GG V    G WR+ G LA+SR  G+  LK +V+AEPE   L +   FE L+  SDGLW+
Sbjct:  135 RGRRGPMEDRYFAAVDRNDDGGYKNAFFGVFDGHGGSKAAEFAAMNLGNNIEAAMASARSGEDGCSMESAIREGYIKTDEDFLKEGSRG-----GACCVTALISKGELAVSNAGDCRAVMSRGGTAEALTSDHNPSQANELKRIEALGGYVDCCNGVWRIQGTLAVSRGIGDRYLKEWVIAEPETRTLRIKPEFEFLILASDGLWD 335          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1F_RAT (Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 9.288e-30
Identity = 68/175 (38.86%), Postives = 97/175 (55.43%), Query Frame = 3
Query:  318 FGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE*VPH 842
            F VFDGHGG  AA Y   H+  N    P+ +TD   A+ E ++ TD  FL+  +      G+T   A++ G  L+VA +GDS+ ++ + G+ + L E HKP R DE+ RIE  GG V     WRV G LA+SRA G+   KP+V  E +    E+    + L+   DG ++ VPH
Sbjct:  190 FAVFDGHGGVDAARYASVHVHTNASHQPELLTDPAAALKEAFRHTDQMFLQKAKRERLQSGTTGVCALITGAALHVAWLGDSQVILVQQGQVVKLMEPHKPERQDEKSRIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGLEDYLLLACDGFFDVVPH 364          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C75_ARATH (Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 9.288e-30
Identity = 93/244 (38.11%), Postives = 121/244 (49.59%), Query Frame = 3
Query:  198 WKSEDGKLR--CGYSSFRGKRATMEDFYDIKTS----NVDGQA-VCMFGVFDGHGGSRAAE--------YLKEHLFENLLKHPQ------------------FMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            WK E+ +     G  S  G+   MED   +K +     V+ Q  V  F V+DGHGGS+ +         ++KE L +NL +  +                  F    ++A S     T V     +       GSTA TA+L  +H+ VAN GDSR V+ + G AIPLS DHKP R DER RIE AGG V+     RV G+LA SRA G+  LKP V  EPE+  +    G E LV  SDGLW+
Sbjct:   98 WKGEETEDEPLYGIVSVMGRSRKMEDSVTVKPNLCKPEVNRQRPVHFFAVYDGHGGSQVSTLCSTTMHTFVKEELEQNLEEEEEGSENDVVERKWRGVMKRSFKRMDEMATSTCVCGTSVPLCNCDPREAAISGSTAVTAVLTHDHIIVANTGDSRAVLCRNGMAIPLSNDHKPDRPDERARIEAAGGRVLVVDGARVEGILATSRAIGDRYLKPMVAWEPEVTFMRRESGDECLVLASDGLWD 341          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C56_ARATH (Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 3.529e-29
Identity = 84/226 (37.17%), Postives = 123/226 (54.42%), Query Frame = 3
Query:  228 GYSSFRGKRATMED--------FYDIKTSNVDGQ-----AVCMFGVFDGHGGSRAAEYLKEH----LFENLLKHPQFMTDT-------KLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            G++S  G+R  MED              S +DG+     A   FGV+DGHGGS+ A Y +E     L E + K    + D        K A+  ++ + D +      +T    GST+  A++  +H++VAN GDSR V+ +   A+PLS DHKP R DE  RIE AGG V+ W G  RV GVLAMSR+ G+  LKP ++ +PE+  ++  +  + L+  SDG+W+
Sbjct:  130 GFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEIESVAPETV---GSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQWNGA-RVFGVLAMSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWD 351          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1F_MOUSE (Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.609e-29
Identity = 67/175 (38.29%), Postives = 96/175 (54.86%), Query Frame = 3
Query:  318 FGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE*VPH 842
            F VFDGHGG  AA Y   H+  N    P+  T+   A+ E ++ TD  FL+  +      G+T   A++ G  L+VA +GDS+ ++ + G+ + L E HKP R DE+ RIE  GG V     WRV G LA+SRA G+   KP+V  E +    E+    + L+   DG ++ VPH
Sbjct:  191 FAVFDGHGGVDAARYASVHVHTNASHQPELRTNPAAALKEAFRLTDEMFLQKAKRERLQSGTTGVCALIAGAALHVAWLGDSQVILVQQGRVVKLMEPHKPERQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGSEDYLLLACDGFFDVVPH 365          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1F_HUMAN (Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 1.341e-28
Identity = 66/175 (37.71%), Postives = 97/175 (55.43%), Query Frame = 3
Query:  318 FGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE*VPH 842
            F VFDGHGG  AA Y   H+  N  + P+  TD + A+ E +++TD  FL   +      G+T   A++ G  L+VA +GDS+ ++ + G+ + L E H+P R DE+ RIE  GG V     WRV G LA+SRA G+   KP+V  E +     +    + L+   DG ++ VPH
Sbjct:  194 FAVFDGHGGVDAARYAAVHVHTNAARQPELPTDPEGALREAFRRTDQMFLRKAKRERLQSGTTGVCALIAGATLHVAWLGDSQVILVQQGQVVKLMEPHRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRALTGSEDYLLLACDGFFDVVPH 368          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C03_ARATH (Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.341e-28
Identity = 90/237 (37.97%), Postives = 120/237 (50.63%), Query Frame = 3
Query:  201 KSEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCM------FGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDD--------------------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            K  D + R G +S  G+R  MED   +  S V  Q          FGV+DGHG S  A   KE L E  L   + ++D K    E  +  +  F   +++  R                      GSTA  +++    + VAN GDSR V+ + GKA+PLS DHKP R DE  RI+ AGG V+ W G  RV GVLAMSRA G+  LKP+V +EPE+   +  E  E L+  +DGLW+
Sbjct:  113 KETDLRPRYGVASVCGRRRDMEDAVALHPSFVRKQTEFSRTRWHYFGVYDGHGCSHVAARCKERLHE--LVQEEALSDKK---EEWKKMMERSFTRMDKEVVRWGETVMSANCRCELQTPDCDAVGSTAVVSVITPEKIIVANCGDSRAVLCRNGKAVPLSTDHKPDRPDELDRIQEAGGRVIYWDGA-RVLGVLAMSRAIGDNYLKPYVTSEPEVTVTDRTEEDEFLILATDGLWD 343          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.902e-28
Identity = 85/233 (36.48%), Postives = 127/233 (54.51%), Query Frame = 3
Query:  222 RCGYSSFRGKRATMEDFYDIKTSNV--DGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLA--ISETYQQTDVDFLESE------------RDTYRDD---------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE*VPH 842
            + G +S  G+R  MED   I  S +  + +    +GVFDGHG S  AE  +E L + + K  + M   +    + +++Q+ D +  + E            +++ R +         GSTA  +++    + V+N GDSR V+ + G AIPLS DHKP R DE  RI+ AGG V+ W G  RV GVLAMSRA G+  LKP+V+ +PE+   +  +  E L+  SDGLW+ VP+
Sbjct:  104 KIGTTSVCGRRRDMEDAVSIHPSFLQRNSENHHFYGVFDGHGCSHVAEKCRERLHDIVKKEVEVMASDEWTETMVKSFQKMDKEVSQRECNLVVNGATRSMKNSCRCELQSPQCDAVGSTAVVSVVTPEKIIVSNCGDSRAVLCRNGVAIPLSVDHKPDRPDELIRIQQAGGRVIYWDGA-RVLGVLAMSRAIGDNYLKPYVIPDPEVTVTDRTDEDECLILASDGLWDVVPN 335          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.656e-28
Identity = 87/230 (37.83%), Postives = 127/230 (55.22%), Query Frame = 3
Query:  228 GYSSFRGKRATMED-------FYDIKTSNV-DGQ---------AVCMFGVFDGHGGSRAAEYLKEH----LFENLLKH-PQFMT-DT-----KLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            G +S  G+R  MED       F  + +S++ DG+         +   FGV+DGHGGS+ A Y +E     L E ++K  P+F   DT     K A+  ++ + D + +E+        GST+  A++   H++VAN GDSR V+ +    + LS DHKP R DE  RIE AGG V+ W G  RV GVLAMSR+ G+  LKP V+ +PE+  +   +  + L+  SDGLW+
Sbjct:  114 GVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFFGVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKALFNSFMRVDSE-IETVAHAPETVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHKPDRDDEAARIEAAGGKVIRWNGA-RVFGVLAMSRSIGDRYLKPSVIPDPEVTSVRRVKEDDCLILASDGLWD 341          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C78_ARATH (Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.693e-28
Identity = 82/220 (37.27%), Postives = 117/220 (53.18%), Query Frame = 3
Query:  228 GYSSFRGKRATMED------FYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERD--------TYRDD----GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            G +S  G+R  MED      F+    +          GV+DGHG S  A   +E L E + +  +   D + +++ ++ + D++ +    D          R D    GSTA  ++L    + VAN GDSR V+ + GKAI LS DHKP R DE  RI+ AGG V+ W G  RV GVLAMSRA G+  LKP+V++ PE+   +   G + L+  SDGLW+
Sbjct:  113 GVASVCGRRREMEDAVAVHPFFSRHQTEYSSTGFHYCGVYDGHGCSHVAMKCRERLHELVREEFEADADWEKSMARSFTRMDMEVVALNADGAAKCRCELQRPDCDAVGSTAVVSVLTPEKIIVANCGDSRAVLCRNGKAIALSSDHKPDRPDELDRIQAAGGRVIYWDGP-RVLGVLAMSRAIGDNYLKPYVISRPEVTVTDRANGDDFLILASDGLWD 331          
The following BLAST results are available for this feature:
BLAST of DY260062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
P2C30_ARATH2.444e-3041.26Probable protein phosphatase 2C 30 OS=Arabidopsis ... [more]
PPM1F_RAT9.288e-3038.86Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm... [more]
P2C75_ARATH9.288e-3038.11Probable protein phosphatase 2C 75 OS=Arabidopsis ... [more]
P2C56_ARATH3.529e-2937.17Protein phosphatase 2C 56 OS=Arabidopsis thaliana ... [more]
PPM1F_MOUSE4.609e-2938.29Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE... [more]
PPM1F_HUMAN1.341e-2837.71Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE... [more]
P2C03_ARATH1.341e-2837.97Protein phosphatase 2C 3 OS=Arabidopsis thaliana G... [more]
P2C37_ARATH3.902e-2836.48Protein phosphatase 2C 37 OS=Arabidopsis thaliana ... [more]
P2C77_ARATH6.656e-2837.83Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]
P2C78_ARATH8.693e-2837.27Probable protein phosphatase 2C 78 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260062 ID=DY260062; Name=DY260062; organism=Citrus clementina; type=EST; length=1074bp
TTGGATCGTTTACTAGAACCAGGCTGGAATTAAGCAACATAAACAAGAGT
TTGCATGCGGGTCTTCCTGTAGGCTATACTTGGAATCGAGAATTTAGAAA
GAGCTCCAAGATGATGGTTGATTCGGCAGCGAAGCGGGGACCCATTGTCG
ATGTATTACCCGAGAAAGAGGATGACGGTGGTTATGTCAGCGGAGGGTGG
AAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGAAA
GAGGGCCACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGATG
GGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCCGT
GCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCATCC
ACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACAGA
CTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATGGT
TCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCCAA
TGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCCTC
TTTCTGAGGATCATAAACCCCACAGATGTGATGAGCGGAAGAGAATTGAA
AATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGTGT
GCTAGCCATGTCTCGTGCTTTTGGTAACCCGCTGCTGAAACCATTTGTCG
TTGCGGAACCTGAGATCCCGGAACTTGAAGTAAATGAAGGATTTGAGCCG
CTTGTGCCTTGCAGTGATGGACTATGGGAATGAGTACCCCATGGAAGATG
CCGGTTGCCCTTGCCCCAACCAGGGGAAAAACCCGAAATCCCCCCCTCGG
AAGTTAACCGAAACCGCCTTTTCCCCCAGGCCGTGGCGGACCACCAAAAC
GTGCTTGGTAGGGGAATTCCCCCCCCTCCCATGGAAAACCCCCCCCAAAC
CCGAATGGGGACCGGGGGTAGGAAATCCCCCTTTTGGGTTGCCGGGGGGC
GAGGGTTTTACCCCCCCCCTTTCG
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