DY260062

Overview
NameDY260062
Unique NameDY260062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1074
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1E_MOUSE (Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.255e-26
Identity = 64/178 (35.96%), Postives = 98/178 (55.06%), Query Frame = 3
Query:  297 DGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            D +    F VFDGHGG  AA Y   HL  NL++   F  D   A+   ++ TD  F++         G+T     + GN L+VA VGDS+ ++ + G+A+ L + HKP R DE++RIE  GG V+W G WRV G L++SRA G+   KP++  + +     ++   + L+   DG ++
Sbjct:  259 DQEEQAYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYD 436          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C50_ORYSJ (Probable protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica GN=Os05g0537400 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.639e-26
Identity = 85/250 (34.00%), Postives = 126/250 (50.40%), Query Frame = 3
Query:  228 GYSSFRGKRATMEDFY------------------DIKTSNVDGQAVCM----FGVFDGHGGSRAAEYLKEHL-------FENLLKHPQFMTDTKL------AISETYQQTDVDF-------------LESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            G +S RG+ A MED                    D+    +D  A+ +    FGVFDGHGG+  A Y +E +        + L K+   M +  +        ++ +Q+ D +              + SE  T  + GSTA  A++  +H+ VAN GDSR V+ +  + + LS DHKP R DER RIE  GG V+ W G +RV G+LAMSR+ G+  LKPFV+ +PE+  +   +  + L+  SDGLW+
Sbjct:   62 GCASTRGRSAEMEDASAAVPRFADVPVRLLASRRDLDALGLDADALRLPAHLFGVFDGHGGAEVANYCRERIHVVLSEELKRLGKNLGEMGEVDMKEHWDDVFTKCFQRVDDEVSGRVTRVVNGGGEVRSEPVTAENVGSTAVVALVCSSHVVVANCGDSRIVLCRGKEPVALSIDHKPDRKDERARIEAQGGKVIQWNG-YRVSGILAMSRSIGDRYLKPFVIPKPEVMVVPRAKDDDCLILASDGLWD 310          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1E_HUMAN (Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.141e-26
Identity = 63/178 (35.39%), Postives = 98/178 (55.06%), Query Frame = 3
Query:  297 DGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            D +    F VFDGHGG  AA Y   HL  NL++   F  D   A+   ++ TD  F++         G+T     + GN L+VA VGDS+ ++ + G+A+ L + HKP R DE++RIE  GG ++W G WRV G L++SRA G+   KP++  + +     ++   + L+   DG ++
Sbjct:  273 DQEEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQEMFPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCIVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYD 450          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C49_ORYSJ (Probable protein phosphatase 2C 49 OS=Oryza sativa subsp. japonica GN=Os05g0457200 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.141e-26
Identity = 88/238 (36.97%), Postives = 116/238 (48.74%), Query Frame = 3
Query:  222 RCGYSSFRGKRATMEDFYDIKTSNVDGQAVC----MFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDD------------------------------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            R G +S  G+R  MED   I+   + G         FGVFDGHG S  A   ++ + E ++   +     K A +      DV     E+   R D                              GSTA  A++  N + VAN GDSR V+ +AG  +PLS DHKP R DE +RI+ AGG V+ W G  RV GVLAMSRA G+  LKP+V +EPE+   E  +  E L+  SDGLW+
Sbjct:   91 RYGVTSVFGRRREMEDAVSIRPDFLRGSTSSGKHHFFGVFDGHGCSHVARMCQDRMHELVVDAYKKAVSGKEAAAAAPAWKDV----MEKGFARMDDEATIWAKSRTGGEPACRCELQTPARCDHVGSTAVVAVVGPNRVVVANSGDSRAVLCRAGVPVPLSVDHKPDRPDELERIKAAGGRVIYWDGA-RVLGVLAMSRAIGDGYLKPYVTSEPEVTVTERADDDECLILASDGLWD 323          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.770e-26
Identity = 79/223 (35.43%), Postives = 114/223 (51.12%), Query Frame = 3
Query:  222 RCGYSSFRGKRATMEDFY--------DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLES-ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPF-----------VVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            R G  S  G R++MED Y             N +      +GVFDGHGG  AAE+   H+   +++  +F ++    +S  + QTD  FLE+   D     G+TA  AIL G  L VAN GD R V+S+ GKAI +S DHKP    ER+RIE +GG V       + G L ++RA G+  ++             ++AEPE+   ++ E  E L+   DG+W+
Sbjct:   89 RSGAWSDIGSRSSMEDAYLCVDNFMDSFGLLNSEAGPSAFYGVFDGHGGKHAAEFACHHIPRYIVEDQEFPSEINKVLSSAFLQTDTAFLEACSLDGSLASGTTALAAILFGRSLVVANAGDCRAVLSRQGKAIEMSRDHKPMSSKERRRIEASGGHVF---DGYLNGQLNVARALGDFHMEGMKKKKDGSDCGPLIAEPELMTTKLTEEDEFLIIGCDGVWD 308          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PP2C2_SCHPO (Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe GN=ptc2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 6.230e-26
Identity = 85/230 (36.96%), Postives = 118/230 (51.30%), Query Frame = 3
Query:  189 SGGWKSEDGKLRCGYSSFRGKRATMEDFY----DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT-KLAISETYQQTDVDFLESERDTYRD-DGSTASTAILVGNH-LYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------PLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            SGG    D  L  G S  +G R +MED +    +   SN        FGVFDGHGG R A+Y ++HL + +   P F       A+   +   D + L  +RD   D  G TA+TA++V +  +Y AN GDSRTV+ + G A PLS DHKP+   E+ RI  AGG + +    RV G LA+SRA G+         P  K  V A P++    ++   E L+   DG+W+
Sbjct:   16 SGG----DRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFGVFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAAD-NALMQDRDMQEDPSGCTATTALIVDHQVIYCANAGDSRTVLGRKGTAEPLSFDHKPNNDVEKARITAAGGFIDFG---RVNGSLALSRAIGDFEYKKDSSLPPEKQIVTAFPDVVIHNIDPDDEFLILACDGIWD 237          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C68_ORYSJ (Probable protein phosphatase 2C 68 OS=Oryza sativa subsp. japonica GN=Os09g0325700 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.063e-25
Identity = 82/233 (35.19%), Postives = 122/233 (52.36%), Query Frame = 3
Query:  222 RCGYSSFRGKRATMEDFYDIK---TSNVDGQAVC----MFGVFDGHGGSRAAEYLKEHLFENLL------------KHPQFMTDTKLAISETYQQTDVDFL---ESERDTYRDDG-------STASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            R G +S  G+R  MED   ++    +  +G+        +GVFDGHG S  A+  +E + E +             + P   T+T   +  ++ + D + +    +E  + R +G       STA  A++  + + VAN GDSR V+ + G  + LS DHKP R DE +RIE AGG V+ W G  RV GVLAMSR+ G+  LKP+V A PE+     ++  E L+  SDGLW+
Sbjct:   74 RHGAASVAGRRREMEDAVSLREAFAAPANGEVAAARCDFYGVFDGHGCSHVADACRERMHELVAEEMGAGSPAAAAREPASWTET---MERSFARMDAEVIAGCRAESGSCRCEGQKCDHVGSTAVVAVVEESRVVVANCGDSRAVLCRGGAPVQLSSDHKPDRPDELERIEAAGGRVIFWEGA-RVLGVLAMSRSIGDAYLKPYVTAVPEVTVTGRSDFDECLILASDGLWD 302          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.063e-25
Identity = 86/247 (34.82%), Postives = 121/247 (48.99%), Query Frame = 3
Query:  228 GYSSFRGKRATMEDFYDIKT-----------SNVDGQAVCM-------FGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT--KLAISETYQ-QTDVDFLES------------------------ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            G  S +G R+ MED + +              + +G +  +       FGV+DGHGG + A+Y ++ L   L +  + + D   K    E  Q Q D  F                           E       GSTA  A++  +H+ V+N GDSR V+ +  +A+PLS DHKP R DE  RIENAGG V+ W G  RV GVLAMSR+ G+  LKP+V+ EPE+  +  +   E L+  SDGLW+
Sbjct:  191 GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGA-RVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWD 436          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C24_ARATH (Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.038e-25
Identity = 81/224 (36.16%), Postives = 113/224 (50.45%), Query Frame = 3
Query:  222 RCGYSSFRGKRATMEDFYDIKTSNVDGQ----AVCMFGVFDGHGGSRAAEYLKEHLF----ENLLKHPQFMTDTKLAISETYQQTDVDFL-------------ESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            R G SS  G+R  MED   I  S    +        FGV+DGHG S  A   +E L     E L    +   + K  +  ++ + D + +             + +       GSTA  +++  + + VAN GDSR V+ + GK +PLS DHKP R DE  RIE AGG V++    RV GVLAMSRA G+  LKP+V  EPE+   +  +  + L+  SDGLW+
Sbjct:   77 RYGVSSVCGRRREMEDAVAIHPSFSSPKNSEFPQHYFGVYDGHGCSHVAARCRERLHKLVQEELSSDMEDEEEWKTTMERSFTRMDKEVVSWGDSVVTANCKCDLQTPACDSVGSTAVVSVITPDKIVVANCGDSRAVLCRNGKPVPLSTDHKPDRPDELDRIEGAGGRVIYWDCPRVLGVLAMSRAIGDNYLKPYVSCEPEVTITDRRDD-DCLILASDGLWD 299          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.175e-24
Identity = 80/213 (37.56%), Postives = 111/213 (52.11%), Query Frame = 3
Query:  228 GYSSFRGKRATMEDFYDIKTS---NVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFG-----NPLLKP---FVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            G SS +G R +MED +    S   +     V  F V+DGHGG + A++   +L + L K+P F   D   A+  ++   D   L+ ++      G TA+  + VGN LY AN GDSRTV+   G A PLS DHKP    E+ RI  AGG V +    RV G LA+SRA G     N  L+P    V A P++   E+ +  E +V   DG+W+
Sbjct:   25 GLSSMQGWRISMEDAHSAILSMECSAVKDPVDFFAVYDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAILDDDQFHTDPSGCTATVVLRVGNKLYCANAGDSRTVLGSKGIAKPLSADHKPSNEAEKARICAAGGFVDFG---RVNGNLALSRAIGDFEFKNSNLEPEKQIVTALPDVVVHEITDDDEFVVLACDGIWD 234          
The following BLAST results are available for this feature:
BLAST of DY260062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PPM1E_MOUSE1.255e-2635.96Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE... [more]
P2C50_ORYSJ1.639e-2634.00Probable protein phosphatase 2C 50 OS=Oryza sativa... [more]
PPM1E_HUMAN2.141e-2635.39Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE... [more]
P2C49_ORYSJ2.141e-2636.97Probable protein phosphatase 2C 49 OS=Oryza sativa... [more]
P2C22_ARATH4.770e-2635.43Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]
PP2C2_SCHPO6.230e-2636.96Protein phosphatase 2C homolog 2 OS=Schizosaccharo... [more]
P2C68_ORYSJ1.063e-2535.19Probable protein phosphatase 2C 68 OS=Oryza sativa... [more]
P2C16_ARATH1.063e-2534.82Protein phosphatase 2C 16 OS=Arabidopsis thaliana ... [more]
P2C24_ARATH4.038e-2536.16Probable protein phosphatase 2C 24 OS=Arabidopsis ... [more]
PP2C3_SCHPO1.175e-2437.56Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260062 ID=DY260062; Name=DY260062; organism=Citrus clementina; type=EST; length=1074bp
TTGGATCGTTTACTAGAACCAGGCTGGAATTAAGCAACATAAACAAGAGT
TTGCATGCGGGTCTTCCTGTAGGCTATACTTGGAATCGAGAATTTAGAAA
GAGCTCCAAGATGATGGTTGATTCGGCAGCGAAGCGGGGACCCATTGTCG
ATGTATTACCCGAGAAAGAGGATGACGGTGGTTATGTCAGCGGAGGGTGG
AAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGAAA
GAGGGCCACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGATG
GGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCCGT
GCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCATCC
ACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACAGA
CTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATGGT
TCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCCAA
TGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCCTC
TTTCTGAGGATCATAAACCCCACAGATGTGATGAGCGGAAGAGAATTGAA
AATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGTGT
GCTAGCCATGTCTCGTGCTTTTGGTAACCCGCTGCTGAAACCATTTGTCG
TTGCGGAACCTGAGATCCCGGAACTTGAAGTAAATGAAGGATTTGAGCCG
CTTGTGCCTTGCAGTGATGGACTATGGGAATGAGTACCCCATGGAAGATG
CCGGTTGCCCTTGCCCCAACCAGGGGAAAAACCCGAAATCCCCCCCTCGG
AAGTTAACCGAAACCGCCTTTTCCCCCAGGCCGTGGCGGACCACCAAAAC
GTGCTTGGTAGGGGAATTCCCCCCCCTCCCATGGAAAACCCCCCCCAAAC
CCGAATGGGGACCGGGGGTAGGAAATCCCCCTTTTGGGTTGCCGGGGGGC
GAGGGTTTTACCCCCCCCCTTTCG
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