DY260062

Overview
NameDY260062
Unique NameDY260062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1074
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PP2C6_PARTE (Probable protein phosphatase 2C 6 OS=Paramecium tetraurelia GN=GSPATT00019634001 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.450e-22
Identity = 78/225 (34.67%), Postives = 119/225 (52.89%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT-KLAISETYQQTD--------VDFLESER---DTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK---------PFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            L+   +  +G R TMED + I   N++   V +F VFDGHGGS  A + + H  E L+K+  +     + A++ET+ + D        +D L   R   D     G TA+ A++VG  LYVAN GDSR+ +++ GK   +S+DHKP    E+KRIE AGG V      RV G L++SRA G+   K           + A P++   +++   + L+   DG++E
Sbjct:   22 LQYAATHMQGWRNTMEDAH-ISDLNIEPD-VHLFAVFDGHGGSEVAIFAERHFREELMKNKNYQQKNYEKALTETFFKIDKMLQEPSGLDELNKIRGVTDEASLAGCTANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDEQEKKRIERAGGFV---SDGRVNGNLSLSRALGDLEYKKDNRFKPEEQIITALPDVKVTQLSAADKFLLMGCDGVFE 241          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PP2C5_PARTE (Probable protein phosphatase 2C 5 OS=Paramecium tetraurelia GN=GSPATT00010582001 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.200e-22
Identity = 72/200 (36.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  243 RGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQ----QTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPFVVAEPE------IPELEVNE 788
            +G R TMED + I   N++   V +F VFDGHGGS  A + + H  E L+K+  +        +T+T   I +  Q    Q +++ +    D     G TA+ A++VG  LYVAN GDSR+ +++ GK   +S+DHKP    E+KRIE AGG V      R  G L++SRA G+   K     +PE      +P+++V +
Sbjct:   30 QGWRNTMEDAH-ISDMNIEPD-VHLFAVFDGHGGSEVAIFAERHFREELMKNKNYQQKNYEKALTETFFKIDKMLQEPSGQDELNKIRGVNDETSLAGCTANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDDQEKKRIERAGGFV---SDGRANGNLSLSRALGDLEYKKDSRFKPEEQIISALPDVKVTQ 224          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PP2C1_PARTE (Protein phosphatase 2C 1 OS=Paramecium tetraurelia GN=GSPATT00029903001 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 3.200e-22
Identity = 76/224 (33.93%), Postives = 117/224 (52.23%), Query Frame = 3
Query:  234 SSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT-KLAISETYQQTDVDFLESE--------RDTYRDD---GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK---------PFVVAEPEIPELEVNEGFEPLVPCSDGLWE*VPH 842
            S  +G R TMED +  +   +  Q V +FGVFDGHGG   A+++++H  + LLK+  F     + A+ ET+ + D   L  E        + T  D+   G TA+ A++  N LYVAN GDSR+V+ +      +S DHKP   +E+ RIE AGG V      RV G L +SRA G+   K           ++A P++ + E+    + ++   DG++E + H
Sbjct:   27 SEMQGWRNTMEDAHIHRPDII--QDVSVFGVFDGHGGREVAQFVEKHFVDELLKNKNFKEQKFEEALKETFLKMDELLLTPEGQKELNQYKATDTDESYAGCTANVALIYKNTLYVANAGDSRSVLCRNNTNHDMSVDHKPDNPEEKSRIERAGGFV---SDGRVNGNLNLSRALGDLEYKRDNKLRSNEQLIIALPDVKKTELTPQDKFILMGCDGVFETLNH 245          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 3.200e-22
Identity = 80/261 (30.65%), Postives = 130/261 (49.81%), Query Frame = 3
Query:  216 KLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESER-----------------------------------DTYRDDG-----------STASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------PLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            +LR G +S +G R TMED +      +D +    FGV+DGHGG   +++  +HL   +LK+  + + D   ++ +++ + D + ++ +R                                   DT+ ++G           STA  AI+  + L VAN GDSR V+S+ G+A  LS+DHKP    E++RI NAGG ++ AG  RV G L ++RA G+         P  +  V AEPE+  ++++E  E +V   DG+W+
Sbjct:   21 RLRYGLASMQGWRTTMEDAHTA-LPRLD-ECTSFFGVYDGHGGKAVSKFCAKHLHLQVLKNEAYSSGDLATSVLKSFFRMD-EMMKGQRGWRELAELGDKGQKFTGMLEGIIWSPKPGESDKPEDTWTEEGPHSHFPGPTSGSTACVAIIRNDELIVANAGDSRCVLSRKGRAYDLSKDHKPDLDAEKERILNAGGFIV-AG--RVNGSLNLARAIGDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWD 275          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C21_ORYSJ (Probable protein phosphatase 2C 21 OS=Oryza sativa subsp. japonica GN=Os02g0606900 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 7.128e-22
Identity = 83/248 (33.47%), Postives = 117/248 (47.18%), Query Frame = 3
Query:  204 SEDGKLRCGYSSF--RGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESE--RDTYRD--------------------------DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------PLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            SE    R  Y+S+  +G R  MED   ++  ++D      FGV+DGHGG+  A Y  +     LL+   ++ +   AI+    + D D   S   R++                             +GSTA   I+ GN + V NVGDSR V+SK G+AI LS DHKPH   ER+RI+ AGG V      R+ G+LA SRA G+         P  +  V   P+I    + +  E LV  SDG+W+
Sbjct:   16 SEGENHRVKYASYTTQGFRPHMEDALAVEL-DLDA-TTSFFGVYDGHGGAEVAMYCAKRFHTMLLEDVDYINNLPNAITSVCFRLDDDLQRSNEWRESLNPCANRNCLTNICANLHHFTEDYVPPSYEGSTACVVIIRGNQIIVGNVGDSRCVLSKNGQAISLSFDHKPHHEAERERIQRAGGHVF---LQRILGMLATSRAIGDFAYKQNRNMPPSQQMVTCVPDIRVENITDDTEFLVIASDGVWD 258          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C08_ARATH (Probable protein phosphatase 2C 8 OS=Arabidopsis thaliana GN=At1g18030 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 7.128e-22
Identity = 80/247 (32.39%), Postives = 128/247 (51.82%), Query Frame = 3
Query:  165 KEDDGGYVSGGWKSEDGKLRCGYSSFRGKRATMEDFYDI---KTSNVDGQAVCM-FGVFDGHGGSRAAEYLKEHLFENLLKH--PQFMTDTKL---AISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAG---------------KAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            +ED   +VS   + ++  +    +  +G R TMED + +    + +  G   C  F ++DGHGG  AAE+ K+HL  N+L    P+ + D K+   AI E +++TD   L+        DG+TA    ++   ++VAN+GD++ V++++                KAI L+ +HK     ER RI+ +GGV+   G  R+ G L +SRAFG+   K F V A P+I   E+ E    ++   DGLWE
Sbjct:   57 EEDKPSFVSE--EKKEFLVEADVAEDKGARHTMEDVWVVLPDASLDFPGTLRCAHFAIYDGHGGRLAAEFAKKHLHLNVLSAGLPRELLDVKVAKKAILEGFRKTDELLLQKSVSGGWQDGATAVCVWILDQKVFVANIGDAKAVLARSSTTNELGNHTEAGNPLKAIVLTREHKAIYPQERSRIQKSGGVISSNG--RLQGRLEVSRAFGDRHFKKFGVSATPDIHAFELTERENFMILGCDGLWE 299          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C49_ARATH (Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.588e-21
Identity = 75/228 (32.89%), Postives = 118/228 (51.75%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMF---------GVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLA---ISETYQQTDVDFLESERDTYRDD------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK------PFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            +R G  +  G +  MED + I+  ++  Q   +F          VFDGHGG  AA Y++E+      +  QF   ++++   + E        FL+++     D       G+TA TA++ G  L VAN GD R V+ + G+AI +SEDHKP    ER+R+E +GG +   G   +  VLA++RA G+  LK        +++EPEI ++ + E  E LV   DG+W+
Sbjct:   77 IRSGSFADIGPKRNMEDEH-IRIDDLSSQVGSLFELPKPSAFYAVFDGHGGPEAAAYVRENAIRFFFEDEQFPQTSEVSSVYVEEVETSLRNAFLQADLALAEDCSISDSCGTTALTALICGRLLMVANAGDCRAVLCRKGRAIDMSEDHKPINLLERRRVEESGGFITNDG--YLNEVLAVTRALGDWDLKLPHGSQSPLISEPEIKQITLTEDDEFLVIGCDGIWD 301          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPMBL_MOUSE (Probable protein phosphatase 1B-like OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.537e-21
Identity = 79/220 (35.91%), Postives = 112/220 (50.91%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDG--QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKH----PQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVG-NHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------PLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            LR G S+ +G RA MED +  + + + G       F V DGHGG+RAA +   HL   +L      PQ     + A+   + Q D     S      D G + + A+LV    LY+A+ GDSR ++S++G     +EDH+PHR  ER+RI +AGG V      RV G LA+SRA G+         P     V AEPE+  L   +  E ++  SDG+W+
Sbjct:   58 LRFGASAVQGWRARMEDAHCARLA-LPGLPSGWAFFAVLDGHGGARAARFGARHLPGYVLGELGPAPQEPDGVRQALRSAFLQADAQL--SALWPRGDPGGSTAVALLVSPRFLYLAHCGDSRALLSRSGSVAFCTEDHRPHRPRERERIHDAGGTVR---RRRVEGSLAVSRALGDFAYKQAPGRPPELQLVSAEPEVAALARQDEDEFVLLASDGVWD 271          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1B_HUMAN (Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.034e-21
Identity = 76/229 (33.19%), Postives = 107/229 (46.72%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTK------LAISETYQQTDVDFLESE---------RDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK---------PFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            LR G SS +G R  MED +        G +    F V+DGH GSR A Y   HL E++  +  F    K      L++          FL+ +         R+     GSTA   ++   H+Y  N GDSR V+ + G+    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K           V  EPE+ E+   E  E ++   DG+W+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWD 247          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PP2C2_CAEEL (Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans GN=T23F11.1 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 6.034e-21
Identity = 70/211 (33.18%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  228 GYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------PLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            G S  +G R  MED +    S  D      F V+DGHGGS+ ++Y   +L + ++   +F   + K AI + + + D      E       G+TA   ++    +Y  N GDSR V S  G+A PLS DHKP    E +RI  AGG   W    RV G LA+SRA G+         P  +  V A P++   ++    E +V   DG+W+
Sbjct:   25 GSSCMQGWRVDMEDAHTHLLSLPDDPKCAFFAVYDGHGGSKVSQYSGINLHKKVVAQKEFSEGNMKEAIEKGFLELDQQMRVDEETKDDVSGTTAVVVLIKEGDVYCGNAGDSRAVSSVVGEARPLSFDHKPSHETEARRIIAAGG---WVEFNRVNGNLALSRALGDFAFKNCDTKPAEEQIVTAFPDVITDKLTPDHEFIVLACDGIWD 232          
The following BLAST results are available for this feature:
BLAST of DY260062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PP2C6_PARTE2.450e-2234.67Probable protein phosphatase 2C 6 OS=Paramecium te... [more]
PP2C5_PARTE3.200e-2236.00Probable protein phosphatase 2C 5 OS=Paramecium te... [more]
PP2C1_PARTE3.200e-2233.93Protein phosphatase 2C 1 OS=Paramecium tetraurelia... [more]
P2C70_ORYSJ3.200e-2230.65Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
P2C21_ORYSJ7.128e-2233.47Probable protein phosphatase 2C 21 OS=Oryza sativa... [more]
P2C08_ARATH7.128e-2232.39Probable protein phosphatase 2C 8 OS=Arabidopsis t... [more]
P2C49_ARATH1.588e-2132.89Probable protein phosphatase 2C 49 OS=Arabidopsis ... [more]
PPMBL_MOUSE3.537e-2135.91Probable protein phosphatase 1B-like OS=Mus muscul... [more]
PPM1B_HUMAN6.034e-2133.19Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE... [more]
PP2C2_CAEEL6.034e-2133.18Probable protein phosphatase 2C T23F11.1 OS=Caenor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260062 ID=DY260062; Name=DY260062; organism=Citrus clementina; type=EST; length=1074bp
TTGGATCGTTTACTAGAACCAGGCTGGAATTAAGCAACATAAACAAGAGT
TTGCATGCGGGTCTTCCTGTAGGCTATACTTGGAATCGAGAATTTAGAAA
GAGCTCCAAGATGATGGTTGATTCGGCAGCGAAGCGGGGACCCATTGTCG
ATGTATTACCCGAGAAAGAGGATGACGGTGGTTATGTCAGCGGAGGGTGG
AAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGAAA
GAGGGCCACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGATG
GGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCCGT
GCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCATCC
ACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACAGA
CTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATGGT
TCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCCAA
TGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCCTC
TTTCTGAGGATCATAAACCCCACAGATGTGATGAGCGGAAGAGAATTGAA
AATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGTGT
GCTAGCCATGTCTCGTGCTTTTGGTAACCCGCTGCTGAAACCATTTGTCG
TTGCGGAACCTGAGATCCCGGAACTTGAAGTAAATGAAGGATTTGAGCCG
CTTGTGCCTTGCAGTGATGGACTATGGGAATGAGTACCCCATGGAAGATG
CCGGTTGCCCTTGCCCCAACCAGGGGAAAAACCCGAAATCCCCCCCTCGG
AAGTTAACCGAAACCGCCTTTTCCCCCAGGCCGTGGCGGACCACCAAAAC
GTGCTTGGTAGGGGAATTCCCCCCCCTCCCATGGAAAACCCCCCCCAAAC
CCGAATGGGGACCGGGGGTAGGAAATCCCCCTTTTGGGTTGCCGGGGGGC
GAGGGTTTTACCCCCCCCCTTTCG
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