DY260062

Overview
NameDY260062
Unique NameDY260062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1074
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11295 contig Ccv1_Contig11295:514..1587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C57_ORYSJ (Probable protein phosphatase 2C 57 OS=Oryza sativa subsp. japonica GN=Os06g0597200 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.034e-21
Identity = 69/212 (32.55%), Postives = 108/212 (50.94%), Query Frame = 3
Query:  246 GKRATMEDFY--------DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLES-ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPF--------VVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            G R TMED +        +    + +      +GVFDGHGG  AA+++  +L   +++   F  + + A+S  + QTD  F ++   ++    G+TA  A++VG  L VAN GD R V+   GKAI +S DHKP    E+ RIE +GG V       + G L ++RA G+  ++          + AEPE+    + E  E L+   DG+W+
Sbjct:   75 GSRHTMEDVFICSDNLMKEFGVESFEDGPSAFYGVFDGHGGKHAADFVCSNLARFIVEDEDFPREIEKALSSAFLQTDAAFADACSVNSSLASGTTALAALVVGRSLLVANAGDCRAVLCCRGKAIEMSRDHKPSCNREKVRIEASGGYVY---DGYLNGQLNVARAIGDWHMEGMKACDGLGPLSAEPEVMIRNLTEEDEFLIIGCDGIWD 283          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.881e-21
Identity = 86/268 (32.09%), Postives = 121/268 (45.15%), Query Frame = 3
Query:  204 SEDG---KLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDV----------------------DFLE--------SERDTYRDD----------------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------PLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            SEDG   KL+ G SS +G RA MED +     N+D +    FGVFDGHGG   A++  ++L   +L+   +   D   A+   + + D                         +E        S+ +  +DD                G TA  A++  N L VAN GDSR VIS+AG+A  LS DHKP    ER RI  AGG +      R+ G L ++RA G+         P  K  V A P+I  +E+ +  + LV   DG+W+
Sbjct:   14 SEDGENDKLKLGLSSMQGWRANMEDAHSALL-NLDNET-SFFGVFDGHGGRVVAKFCAKYLHSQVLRSEAYSAGDLGTAVHRAFFRMDEMMRGQRGWRELSALGDKINKIGGMIEGLIWSPRGSDSNNGQDDWSFEEGPHSDFAGPTCGCTACVALIRNNQLVVANAGDSRCVISRAGQAYNLSRDHKPELEAERDRIVKAGGFIHMG---RINGSLNLTRAIGDMEFKQNKFLPPEKQIVTANPDINVVELCDDDDFLVLACDGIWD 276          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1B_BOVIN (Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.029e-20
Identity = 75/229 (32.75%), Postives = 107/229 (46.72%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKL------AISETYQQTDVDFLESE---------RDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK---------PFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            LR G SS +G R  MED +        G +    F V+DGH GSR A Y   HL E++  +  F    K       ++          FL+ +         R+     GSTA   ++   H+Y  N GDSR V+ ++G+    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K           V  EPE+ E+   E  E ++   DG+W+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITNNEDFRAAGKSGSALEPSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRSGQVCFSTQDHKPCNPREKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWD 247          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.344e-20
Identity = 73/229 (31.88%), Postives = 119/229 (51.97%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFY---DIKTSNVDGQAVC-----MFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVD-----FLESER------DTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK------PFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            +R G  +  G R  MED +   D  ++++    VC      +GVFDGHGG  AA Y+K H    L +  +F   ++  + ETY Q+  +     FL+++       D  R  G+TA TA++ G  L VAN GD R V+ + G A+ +S DH+ +  +E +R+  +GG +       + GVL+++RA G+  +K        ++AEPE  +  + E  E L+   DG+W+
Sbjct:   75 IRSGSFADIGPRRYMEDEHIRIDDLSAHLGSLLVCPLPSAFYGVFDGHGGLDAAAYMKRHAMRFLFEDSEFPQASQ--VDETYVQSVENSVRRAFLQADLALADDLDISRSSGTTALTALVFGRQLLVANAGDCRAVLCRRGVAMEMSRDHRANYAEECERVAASGGYI---EDGYLNGVLSVTRALGDWDMKMPDGSISPLIAEPEFRQTMLTEDDEFLIMGCDGIWD 298          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1B_RAT (Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.293e-20
Identity = 77/229 (33.62%), Postives = 108/229 (47.16%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTK--LAISETYQQTDVD----FLESE---------RDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK---------PFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            LR G SS +G R  MED +        G +    F V+DGH GSR A Y   HL E++  +  F    K   A+  + +         FL+ +         R+     GSTA   ++   H+Y  N GDSR V+ + G+    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K           V  EPE+ E+   E  E +V   DG+W+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAADKSGFALEPSVENVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPTHIYFINCGDSRAVLCRNGQVCFSTQDHKPCNPMEKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFVVLACDGIWD 247          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.995e-20
Identity = 84/275 (30.55%), Postives = 126/275 (45.82%), Query Frame = 3
Query:  204 SEDG---KLRCGYSSFRGKRATMEDFY------DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESERD-----------------------------------------------TYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------PLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            SEDG   KLR G SS +G RATMED +      D KTS         FGV+DGHGG   A++  ++L + ++ +  + T D + ++   + + D D ++ +R                                                T    G TA  A++    L+VAN GDSR VIS+  +A  LS+DHKP    E++RI  AGG +  AG  R+ G L ++RA G+         P  K  V A+P+I  +++ +  + LV   DG+W+
Sbjct:   14 SEDGENDKLRFGLSSMQGWRATMEDAHAAILDLDDKTS--------FFGVYDGHGGKVVAKFCAKYLHQQVISNEAYKTGDVETSLRRAFFRMD-DMMQGQRGWRELAVLGDKMNKFSGMIEGFIWSPRSGDTNNQPDSWPLEDGPHSDFTGPTSGCTACVALIKDKKLFVANAGDSRCVISRKSQAYNLSKDHKPDLEVEKERILKAGGFI-HAG--RINGSLNLTRAIGDMEFKQNKFLPSEKQMVTADPDINTIDLCDDDDFLVVACDGIWD 276          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.911e-20
Identity = 88/269 (32.71%), Postives = 122/269 (45.35%), Query Frame = 3
Query:  204 SEDG---KLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLK-------------HPQFMTDTKL-----------AISETYQQTDVDFLE--------SERDTYRDD----------------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFG------NPLLKP---FVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            SEDG   KL+ G SS +G RATMED +     ++D      FGVFDGHGG   A++  ++L   +L+             H  F    ++           A+ +   Q     +E        S+ +   DD                GSTA  AI+  + L VAN GDSR VIS+ G+A  LS DHKP    ER+RI  AGG +      RV G + +SRA G      N  L P    + A P+I  +E+ +  + LV   DG+W+
Sbjct:   14 SEDGENDKLKFGLSSMQGWRATMEDAHSALL-DIDNDT-SFFGVFDGHGGRVVAKFCAKYLHREVLRSEAYSAGDLGNAAHKAFFRMDEMMRGQRGWRELQALGDKINQIS-GMIEGLIWSPRGSDSNDQHDDWAFEEGPHSDFAGPTCGSTACVAIVRNSQLVVANAGDSRCVISRNGQAYNLSRDHKPELEAERERILKAGGYIQMG---RVNGTINLSRAIGDIEFKQNKFLSPDKQMLTANPDINTVELCDDDDFLVLACDGIWD 276          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1B_MOUSE (Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.108e-20
Identity = 76/229 (33.19%), Postives = 105/229 (45.85%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKL------AISETYQQTDVDFLESE---------RDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK---------PFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            LR G SS +G R  MED +        G      F V+DGH GSR A Y   HL E++  +  F    K       ++          FL+ +         R+     GSTA   ++   H+Y  N GDSR V+ + G+    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K           V  EPE+ E+   E  E +V   DG+W+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVVGIPHGLDNWSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAADKSGSALEPSVESVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMVSPTHMYFINCGDSRAVLCRNGQVCFSTQDHKPCNPVEKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEIVRAEEDEFVVLACDGIWD 247          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 98.9821 bits (245), Expect = 5.108e-20
Identity = 76/244 (31.15%), Postives = 116/244 (47.54%), Query Frame = 3
Query:  234 SSFRGKRATMEDFYDIKTSNVDGQA-VCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESE----------------RDTYRD------------------DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWA-GTWRVGGVLAMSRAFG------NPLLKP---FVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            S+ +G R+TMED +     N+D       FGV+DGHGGS  A Y   HL   +L+   F ++   A+ +++ + D + L ++                R   R                   +G TA   ++    + V N GD+R VIS+ G+AI LS DHKP+  +E +RI  AGG V ++ G+ RV   +A+SRA G      N  L+P    +   PEI   ++ +  E LV   DG+W+
Sbjct:   30 SAMQGYRSTMEDAH-ATIENLDALTNTSFFGVYDGHGGSAVARYCANHLHNKVLEQEDFSSNLANALRQSFFRMD-EMLRNQAASKELTEYGSGNEYWRTAGRSWLRCAPCVLGPVYCGPLAEGCTACVVLIRNTQIVVGNAGDARCVISRNGQAIALSNDHKPNFPEETQRIVAAGGSVSFSRGSHRVNNGIAVSRAIGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWD 271          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPMBL_HUMAN (Probable protein phosphatase 1B-like OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 6.671e-20
Identity = 79/227 (34.80%), Postives = 109/227 (48.02%), Query Frame = 3
Query:  195 GWKSEDGKLRCGYSSFRGKRATMEDFYDIKTSNVDG--QAVCMFGVFDGHGGSRAAEY----LKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------PLLKPFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            G     G LR G S+ +G RA MED +    S + G      +F V DGHGG+RAA +    L  H+ + L   P      + A+   +   D + L S        G TA   ++    LY+A+ GDSR V+S+AG     +EDH+P R  ER+RI  AGG +      RV G LA+SRA G+         P     V AEPE+  L      E ++  SDG+W+
Sbjct:   57 GGAEASGGLRFGASAAQGWRARMEDAHCTWLS-LPGLPPGWALFAVLDGHGGARAARFGARHLPGHVLQELGPEPSEPEGVREALRRAFLSAD-ERLRSLWPRVETGGCTAVVLLVSPRFLYLAHCGDSRAVLSRAGAVAFSTEDHRPLRPRERERIHAAGGTIR---RRRVEGSLAVSRALGDFTYKEAPGRPPELQLVSAEPEVAALARQAEDEFMLLASDGVWD 278          
The following BLAST results are available for this feature:
BLAST of DY260062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
P2C57_ORYSJ6.034e-2132.55Probable protein phosphatase 2C 57 OS=Oryza sativa... [more]
P2C11_ORYSJ7.881e-2132.09Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
PPM1B_BOVIN1.029e-2032.75Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2... [more]
P2C47_ORYSJ1.344e-2031.88Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]
PPM1B_RAT2.293e-2033.62Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm... [more]
P2C21_ARATH2.995e-2030.55Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C58_ORYSJ3.911e-2032.71Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
PPM1B_MOUSE5.108e-2033.19Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE... [more]
P2C42_ORYSJ5.108e-2031.15Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
PPMBL_HUMAN6.671e-2034.80Probable protein phosphatase 1B-like OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260062 ID=DY260062; Name=DY260062; organism=Citrus clementina; type=EST; length=1074bp
TTGGATCGTTTACTAGAACCAGGCTGGAATTAAGCAACATAAACAAGAGT
TTGCATGCGGGTCTTCCTGTAGGCTATACTTGGAATCGAGAATTTAGAAA
GAGCTCCAAGATGATGGTTGATTCGGCAGCGAAGCGGGGACCCATTGTCG
ATGTATTACCCGAGAAAGAGGATGACGGTGGTTATGTCAGCGGAGGGTGG
AAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGAAA
GAGGGCCACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGATG
GGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCCGT
GCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCATCC
ACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACAGA
CTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATGGT
TCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCCAA
TGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCCTC
TTTCTGAGGATCATAAACCCCACAGATGTGATGAGCGGAAGAGAATTGAA
AATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGTGT
GCTAGCCATGTCTCGTGCTTTTGGTAACCCGCTGCTGAAACCATTTGTCG
TTGCGGAACCTGAGATCCCGGAACTTGAAGTAAATGAAGGATTTGAGCCG
CTTGTGCCTTGCAGTGATGGACTATGGGAATGAGTACCCCATGGAAGATG
CCGGTTGCCCTTGCCCCAACCAGGGGAAAAACCCGAAATCCCCCCCTCGG
AAGTTAACCGAAACCGCCTTTTCCCCCAGGCCGTGGCGGACCACCAAAAC
GTGCTTGGTAGGGGAATTCCCCCCCCTCCCATGGAAAACCCCCCCCAAAC
CCGAATGGGGACCGGGGGTAGGAAATCCCCCTTTTGGGTTGCCGGGGGGC
GAGGGTTTTACCCCCCCCCTTTCG
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