DY260062

Overview
NameDY260062
Unique NameDY260062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1074
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1K_HUMAN (Protein phosphatase 1K, mitochondrial OS=Homo sapiens GN=PPM1K PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.713e-20
Identity = 75/208 (36.06%), Postives = 107/208 (51.44%), Query Frame = 3
Query:  228 GYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHL----FENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMW--AGTWRVGGVLAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEP-LVPCSDGL 824
            G +S  GKR   ED +D      +   V  F V+DGHGG  AA++   H+     + L K     T   LA  E  +        S   T    G+TA+ A+L  G  L VA+VGDSR ++ + GK + L+ DH P R DE++RI+  GG V W   G   V G LAM+R+ G+  LK   V+AEPE   ++++   +  LV  +DG+
Sbjct:   96 GCASQIGKRKENEDRFDFAQLTDE---VLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGI 300          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1A_BOVIN (Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.138e-19
Identity = 74/225 (32.89%), Postives = 111/225 (49.33%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK---------PFVVAEPEIPELEVNEGFEP-LVPCSDGLWE 830
            LR G SS +G R  MED +        G +    F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K           V  EPE+ ++E +E  +  ++   DG+W+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVYFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWD 243          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: P2C57_ARATH (Protein phosphatase 2C 57 OS=Arabidopsis thaliana GN=PPH1 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.138e-19
Identity = 75/249 (30.12%), Postives = 124/249 (49.80%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFE---------NLLKHPQFMTDTKLAISETYQQTD---VDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPH-----RCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFG--------NPLLK--------------------PFVVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            +R GY+S +G R  MED   I++  VD  +     VFDGH GS + ++L+E L++         +LL    F    K A+ + ++  D   + +LE+  D   + GSTA+  I+  +  ++A++GDS  V+S++G+   L++ H+P+        E KR++ AGG   W    R+ G +A+SRAFG        N +LK                      VVA P+I ++ +    E ++  SDGLW+
Sbjct:   58 IRWGYTSVQGFRDEMEDDIVIRSDAVDSFSYA--AVFDGHAGSSSVKFLREELYKECVGALQAGSLLNGGDFAA-IKEALIKAFESVDRNLLKWLEANGDEEDESGSTATVMIIRNDVSFIAHIGDSCAVLSRSGQIEELTDYHRPYGSSRAAIQEVKRVKEAGG---WIVNGRICGDIAVSRAFGDIRFKTKKNDMLKKGVDEGRWSEKFVSRIEFKGDMVVATPDIFQVPLTSDVEFIILASDGLWD 300          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: ILKAP_BOVIN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Bos taurus GN=ILKAP PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.138e-19
Identity = 67/190 (35.26%), Postives = 109/190 (57.37%), Query Frame = 3
Query:  309 VCMFGVFDGHGGSRAAEYLKEHLFENLL-KHPQ-----FMTDTKLAISETYQQTDVDFLE---SERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI------SKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            V  F VFDGHGG RA+++  ++L +NL+ K P+          K  + +T++ TD +FL+   S++  ++D GSTA+  + V N LY+AN+GDSR ++      S+   A+ LS++H P + +ER RI+ AGG V      RV GVL +SR+ G+   K   V + P+I   ++      ++   DGL++
Sbjct:  123 VSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDGISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKD-GSTATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFK 308          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1A_HUMAN (Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.486e-19
Identity = 74/225 (32.89%), Postives = 112/225 (49.78%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK---------PFVVAEPEIPELEVNEGFEP-LVPCSDGLWE 830
            LR G SS +G R  MED +        G ++   F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K           V  EPE+ ++E +E  +  ++   DG+W+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWD 243          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: ILKAP_RAT (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Rattus norvegicus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.486e-19
Identity = 67/190 (35.26%), Postives = 109/190 (57.37%), Query Frame = 3
Query:  309 VCMFGVFDGHGGSRAAEYLKEHLFENLL-KHPQ-----FMTDTKLAISETYQQTDVDFLE---SERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI------SKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            V  F VFDGHGG RA+++  ++L +NL+ K P+          K  + +T++ TD +FL+   S++  ++D GSTA+  + V N LY+AN+GDSR ++      S+   A+ LS++H P + +ER RI+ AGG V      RV GVL +SR+ G+   K   V + P+I   ++      ++   DGL++
Sbjct:  145 VSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKD-GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFK 330          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: ILKAP_MOUSE (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Mus musculus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.486e-19
Identity = 67/190 (35.26%), Postives = 109/190 (57.37%), Query Frame = 3
Query:  309 VCMFGVFDGHGGSRAAEYLKEHLFENLL-KHPQ-----FMTDTKLAISETYQQTDVDFLE---SERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI------SKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            V  F VFDGHGG RA+++  ++L +NL+ K P+          K  + +T++ TD +FL+   S++  ++D GSTA+  + V N LY+AN+GDSR ++      S+   A+ LS++H P + +ER RI+ AGG V      RV GVL +SR+ G+   K   V + P+I   ++      ++   DGL++
Sbjct:  145 VSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDIISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKD-GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFK 330          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: ILKAP_HUMAN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.486e-19
Identity = 67/190 (35.26%), Postives = 109/190 (57.37%), Query Frame = 3
Query:  309 VCMFGVFDGHGGSRAAEYLKEHLFENLL-KHPQ-----FMTDTKLAISETYQQTDVDFLE---SERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI------SKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLKPF-VVAEPEIPELEVNEGFEPLVPCSDGLWE 830
            V  F VFDGHGG RA+++  ++L +NL+ K P+          K  + +T++ TD +FL+   S++  ++D GSTA+  + V N LY+AN+GDSR ++      S+   A+ LS++H P + +ER RI+ AGG V      RV GVL +SR+ G+   K   V + P+I   ++      ++   DGL++
Sbjct:  145 VSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKD-GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFK 330          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.941e-19
Identity = 74/225 (32.89%), Postives = 111/225 (49.33%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK---------PFVVAEPEIPELEVNEGFEP-LVPCSDGLWE 830
            LR G SS +G R  MED +        G +    F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K           V  EPE+ ++E +E  +  ++   DG+W+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWD 243          
BLAST of DY260062 vs. ExPASy Swiss-Prot
Match: PPM1A_RABIT (Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.941e-19
Identity = 74/225 (32.89%), Postives = 111/225 (49.33%), Query Frame = 3
Query:  219 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPHRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNPLLK---------PFVVAEPEIPELEVNEGFEP-LVPCSDGLWE 830
            LR G SS +G R  MED +        G +    F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K           V  EPE+ ++E +E  +  ++   DG+W+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWD 243          
The following BLAST results are available for this feature:
BLAST of DY260062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
PPM1K_HUMAN8.713e-2036.06Protein phosphatase 1K, mitochondrial OS=Homo sapi... [more]
PPM1A_BOVIN1.138e-1932.89Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2... [more]
P2C57_ARATH1.138e-1930.12Protein phosphatase 2C 57 OS=Arabidopsis thaliana ... [more]
ILKAP_BOVIN1.138e-1935.26Integrin-linked kinase-associated serine/threonine... [more]
PPM1A_HUMAN1.486e-1932.89Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE... [more]
ILKAP_RAT1.486e-1935.26Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_MOUSE1.486e-1935.26Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_HUMAN1.486e-1935.26Integrin-linked kinase-associated serine/threonine... [more]
PPM1A_RAT1.941e-1932.89Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]
PPM1A_RABIT1.941e-1932.89Protein phosphatase 1A OS=Oryctolagus cuniculus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260062 ID=DY260062; Name=DY260062; organism=Citrus clementina; type=EST; length=1074bp
TTGGATCGTTTACTAGAACCAGGCTGGAATTAAGCAACATAAACAAGAGT
TTGCATGCGGGTCTTCCTGTAGGCTATACTTGGAATCGAGAATTTAGAAA
GAGCTCCAAGATGATGGTTGATTCGGCAGCGAAGCGGGGACCCATTGTCG
ATGTATTACCCGAGAAAGAGGATGACGGTGGTTATGTCAGCGGAGGGTGG
AAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGAAA
GAGGGCCACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGATG
GGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCCGT
GCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCATCC
ACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACAGA
CTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATGGT
TCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCCAA
TGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCCTC
TTTCTGAGGATCATAAACCCCACAGATGTGATGAGCGGAAGAGAATTGAA
AATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGTGT
GCTAGCCATGTCTCGTGCTTTTGGTAACCCGCTGCTGAAACCATTTGTCG
TTGCGGAACCTGAGATCCCGGAACTTGAAGTAAATGAAGGATTTGAGCCG
CTTGTGCCTTGCAGTGATGGACTATGGGAATGAGTACCCCATGGAAGATG
CCGGTTGCCCTTGCCCCAACCAGGGGAAAAACCCGAAATCCCCCCCTCGG
AAGTTAACCGAAACCGCCTTTTCCCCCAGGCCGTGGCGGACCACCAAAAC
GTGCTTGGTAGGGGAATTCCCCCCCCTCCCATGGAAAACCCCCCCCAAAC
CCGAATGGGGACCGGGGGTAGGAAATCCCCCTTTTGGGTTGCCGGGGGGC
GAGGGTTTTACCCCCCCCCTTTCG
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