DY260068

Overview
NameDY260068
Unique NameDY260068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length949
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_HUMAN (Elongator complex protein 3 OS=Homo sapiens GN=ELP3 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 6.234e-80
Identity = 147/196 (75.00%), Postives = 165/196 (84.18%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 590
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM DLG++CRDVRTRE GIQ+IHH+++P +VELVRRDYVAN GWETFLSYED  QDIL+GLLRLRKC       EL G  SIVRELHVYG+ VPV  R+  K QHQG+G LLMEEAERIA  EH S K+AVISGVGTR+YYRK+GY L+GPYMVK L+
Sbjct:  352 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGPYMVKMLK 547          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_CAEEL (Probable elongator complex protein 3 OS=Caenorhabditis elegans GN=elpc-3 PE=2 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 5.835e-78
Identity = 141/196 (71.94%), Postives = 164/196 (83.67%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 590
            IL+ +PPWTRVYRVQRDIPMPLV+SGVE GNLRE A+A+M +LGLKCRDVRTRE GIQ+IH++++PE+VEL+RRDY AN GWETF+SYED +QDIL+GLLRLRK       PEL G  S+VRELHVYG+ V V  R+  K QHQGYG+LLMEEAERIA  EH S K+AVISGVGTR YYRKLGYEL+GPYM K L+
Sbjct:  348 ILSLVPPWTRVYRVQRDIPMPLVSSGVEHGNLREHAMAKMKELGLKCRDVRTREVGIQEIHNKVRPEDVELIRRDYTANGGWETFISYEDPKQDILIGLLRLRKISDKAHRPELKGNVSVVRELHVYGSVVSVADRDPKKFQHQGYGSLLMEEAERIAREEHGSDKIAVISGVGTREYYRKLGYELDGPYMSKMLD 543          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_CAEBR (Probable elongator complex protein 3 OS=Caenorhabditis briggsae GN=elpc-3 PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.939e-77
Identity = 140/196 (71.43%), Postives = 163/196 (83.16%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 590
            IL+ +PPWTRVYRVQRDIPMPLV+SGVE GNLRE A+A+M +LGLKCRDVRTRE GIQ+IH++++PE+VEL+RRDY AN GWETF+SYED +QDIL+GLLRLRK        EL G  S+VRELHVYG+ V V  R+  K QHQGYG+LLMEEAERIA  EH S K+AVISGVGTR YYRKLGYEL+GPYM K L+
Sbjct:  348 ILSLVPPWTRVYRVQRDIPMPLVSSGVEHGNLREHAMAKMKELGLKCRDVRTREVGIQEIHNKVRPEDVELIRRDYTANGGWETFISYEDPKQDILIGLLRLRKISDKAHRAELKGNVSVVRELHVYGSVVSVADRDPKKFQHQGYGSLLMEEAERIAREEHESDKIAVISGVGTRDYYRKLGYELDGPYMSKTLD 543          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_SCHPO (Probable elongator complex protein 3 OS=Schizosaccharomyces pombe GN=elp3 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.100e-76
Identity = 137/196 (69.90%), Postives = 163/196 (83.16%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGK-CSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYL 587
            ILA +PPWTR+YR+QRDIPMPLV+SGVE GNLRELAL RM DLG KCRD+R RE G+Q++HH+I PE+VEL+RRDY AN GWETFLSYED +QDIL+GLLRLR+C      PE   +  S+VRELHVYG+AVPVH R+  K QHQG+GTLL+EEAERIA  EH S+K++VISGVG R YY+KLGY L+GPYM K+L
Sbjct:  349 ILALVPPWTRIYRIQRDIPMPLVSSGVETGNLRELALNRMRDLGTKCRDIRAREVGMQEVHHKIHPEQVELLRRDYTANGGWETFLSYEDPKQDILIGLLRLRQCSDKTYRPEFTSQPTSLVRELHVYGSAVPVHSRDPKKFQHQGFGTLLLEEAERIAKYEHGSKKISVISGVGVRKYYQKLGYTLDGPYMSKWL 544          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: ELP3_YEAST (Elongator complex protein 3 OS=Saccharomyces cerevisiae GN=ELP3 PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 7.133e-76
Identity = 137/195 (70.26%), Postives = 162/195 (83.08%), Query Frame = 3
Query:    3 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPE--LMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVK 581
            ILA +PPWTR+YRVQRDIPMPLVTSGV+ GNLRELALARM DLG  CRDVRTRE GIQ++HH+++P++VEL+RRDY AN GWETFLSYED ++DIL+GLLRLRK  +  T  +     + SIVRELHVYG+ VP+H R+  K QHQG+GTLLMEEAERIA  EH S K++VISGVG R+YY KLGYEL+GPYM K
Sbjct:  361 ILALVPPWTRIYRVQRDIPMPLVTSGVDNGNLRELALARMKDLGTTCRDVRTREVGIQEVHHKVQPDQVELIRRDYYANGGWETFLSYEDPKKDILIGLLRLRKASKKYTYRKEFTSQRTSIVRELHVYGSVVPLHSRDPRKFQHQGFGTLLMEEAERIAKEEHGSEKISVISGVGVRNYYGKLGYELDGPYMSK 555          
BLAST of DY260068 vs. ExPASy Swiss-Prot
Match: Y1136_METJA (Uncharacterized protein MJ1136 OS=Methanocaldococcus jannaschii GN=MJ1136 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.315e-37
Identity = 89/196 (45.41%), Postives = 119/196 (60.71%), Query Frame = 3
Query:   15 LPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKP--EEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKL--QHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMVKYLE 590
            +P W R  R+QRDIP  ++  GV+K NL EL    M+  G+KC+ +R RE G       I P  E ++L R +Y A+ G E FLSYED + DIL+  LRLR+  +     E+     +VR+LHV G   P+  ++  ++  QH+GYG  L+EEAERIA  E   +K+ V SG+G R YYRKLGYE  G YM KYLE
Sbjct:  348 MPKWVRTSRIQRDIPATVIVDGVKKSNLGELVYKYMEKHGIKCKCIRCREVGHVMYKKGIMPDIEHIKLCREEYEASGGTEIFLSYEDVKNDILIAFLRLREPYKPFR-KEIDDNTMLVRQLHVCGQEKPLT-KDLKEITWQHKGYGRKLLEEAERIAKEEFGKKKILVTSGIGVREYYRKLGYERVGAYMGKYLE 541          
The following BLAST results are available for this feature:
BLAST of DY260068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ELP3_HUMAN6.234e-8075.00Elongator complex protein 3 OS=Homo sapiens GN=ELP... [more]
ELP3_CAEEL5.835e-7871.94Probable elongator complex protein 3 OS=Caenorhabd... [more]
ELP3_CAEBR4.939e-7771.43Probable elongator complex protein 3 OS=Caenorhabd... [more]
ELP3_SCHPO1.100e-7669.90Probable elongator complex protein 3 OS=Schizosacc... [more]
ELP3_YEAST7.133e-7670.26Elongator complex protein 3 OS=Saccharomyces cerev... [more]
Y1136_METJA1.315e-3745.41Uncharacterized protein MJ1136 OS=Methanocaldococc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260068 ID=DY260068; Name=DY260068; organism=Citrus clementina; type=EST; length=949bp
GGATTCTAGCCCCTTTACCCCCTTGGACTCGTGTTTATAGAGTTCAGCGT
GATATTCCCATGCCTTTGGTTACTTCCGGGGTTGAGAAAGGGAACCTTCG
GGAGCTAGCTTTAGCTCGGATGGATGACTTGGGCTTGAAATGCCGTGATG
TTCGGACACGCGAAGCTGGAATTCAGGACATCCATCATCAAATAAAGCCA
GAAGAAGTAGAGCTTGTCCGTCGTGATTATGTGGCAAATGAAGGTTGGGA
AACATTTCTTTCGTACGAAGACACACGCCAGGATATTCTTGTTGGCTTGT
TGCGCTTGAGGAAGTGTGGGCGGAATGTTACTTGTCCAGAGCTCATGGGC
AAGTGTTCTATTGTTCGTGAACTCCATGTGTATGGAACCGCTGTTCCTGT
GCACGGTCGGGAAGCTGACAAGCTGCAACACCAGGGTTACGGTACACTCT
TAATGGAAGAGGCAGAGCGGATTGCACTTGGAGAGCACAGATCAAGAAAG
ATGGCCGTCATTTCAGGTGTAGGAACTCGACATTACTATAGAAAATTGGG
ATACGAACTTGAAGGTCCTTACATGGTGAAATATCTTGAGTGACCAGACA
ATAGAATTCAACGCCATTCTTTACCGGCACTCACACAAATTTCGTAATTC
TATCACATTGAGTTGTACAACTTGAGTGAACTTGCCCATGTACTACAAAG
GGCTTCCCTTCGCGACAACCCTCTCTTGTATGCCCCCCCACGCGCAACCC
CCGCCTGCCCCCCGATTCCCCCCAAAATCAGTGGTTTCCACTCCTCTCTA
AACTAAACACACCACCCCCCCCCCCCCCCCTCCGCTCCCCGATCTCCCTT
TCACCCCCGCCCTCTCTCCTCCCTCTCTCCTGCCTCTCCCCCCCTCCCAA
TCCCTCCCACCCCCCTCTCTCACCCTCCACTCCCGAATAATTCTTCCAC
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