DY260087

Overview
NameDY260087
Unique NameDY260087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1058
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPA5L_BOVIN (Spermatogenesis-associated protein 5-like protein 1 OS=Bos taurus GN=SPATA5L1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.312e-23
Identity = 53/133 (39.85%), Postives = 85/133 (63.91%), Query Frame = 2
Query:  113 ILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSAR 511
            I PS    ++ +  ++ V    ++ IGGL+    ++K+ IE P+K P  F  +G+ QPKGVLLYGPPG  KT L RA+A    C+F+ VSG++L   ++G+  +++ ++F  AR + P+I+F+DEIDS   +R
Sbjct:  446 IQPSSFRSVIGVTDIKPVG---WEQIGGLEDVKLKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCRCSFVSVSGADLFSPFVGDSEKILSQVFRQARANTPAIVFLDEIDSILGSR 575          

HSP 2 Score: 86.2705 bits (212), Expect = 3.355e-16
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  188 IGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA---PSIIFMDEIDS 496
            +GGL +    ++E++ LP++ P    SLG+  P+GVLL GPPG GKT L RAVA  T    + VS   L     GE    VR +F  ARE A   P+++F+DE+D+
Sbjct:  202 LGGLSEAADSLRELLRLPLRYPRALASLGLEVPRGVLLAGPPGVGKTQLVRAVARETGAELLAVSAPALQGARPGETEENVRRIFKRARELASRRPTLLFLDEVDA 307          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.312e-23
Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 2
Query:  179 YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSE 544
            +D I GL+     +KE +  P   P+LF   G+ +P +G+LL+GPPGTGKT+LARAVA  +  TF  +S S L  KY+GE  ++VR LF +A++ +PSIIF+DEIDS        GSRN ++E
Sbjct:  604 WDDIAGLESAKYSLKEAVVYPFLRPDLFR--GLREPVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKLSPSIIFVDEIDSI------MGSRNNENE 718          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.312e-23
Identity = 58/138 (42.03%), Postives = 79/138 (57.25%), Query Frame = 2
Query:  161 KVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNG--DSEVQRTMLEL 568
            K+P+  +D +GGL      + E I+LP++ PELF   G+ +  G+L YGPPGTGKTLLA+A+A      F  V G EL+  YIGE    VR +F  AR+  P ++F DE+DS    R   G   G  D  V + + EL
Sbjct: 1023 KIPNVGWDDVGGLTNVKDALVETIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIATEFSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAEL 1159          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 8.244e-23
Identity = 61/144 (42.36%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  137 LVNLMKVEKVPDST---YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTM 559
            L N +  E V + T   +D I G +   + ++E++ LP   PELF  L  A  +G+LL+GPPG GKT+LA+AVA  ++ TF  +S + L  KY+GEG ++VR LF +ARE  PSIIF+DE+DS    R     R G+ +  R +
Sbjct:  321 LANFIMNEIVDNGTAVKFDDIAGQELAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLRER-----REGEHDASRRL 458          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 8.244e-23
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 2
Query:  167 PDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSAR--MQSGSRNGDSEVQRTML 562
            P+  ++ I GLD   + +KE +  PI+ P+LF   GI  P KG+LLYGPPGTGKTLLA+AVA     TF  +S S +V K+ G+  ++VR LF +AR HAPS IF+DE++S  S R  +  G   G   ++  +L
Sbjct:  250 PNIKWNDIIGLDAAKQLVKEAVVYPIRYPQLFT--GILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELL 382          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.077e-22
Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = 2
Query:  176 TYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQ 517
            T++ + G+++  +E++EV+E  +K P+ F  LG   PKG+LL GPPGTGKTLLARAVA   D  F   SGSE  + ++G G+  +R LF  A+ +AP +IF+DE+DS G  R++
Sbjct:  279 TFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIE 391          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.077e-22
Identity = 57/127 (44.88%), Postives = 83/127 (65.35%), Query Frame = 2
Query:  179 YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRT 556
            +D I GL+     +KE +  P   P+LF+  G+ +P +G+LL+GPPGTGKT+LARAVA  +   F  +S S L  K++GE  ++VR LF +A++ +PSIIF+DEIDS  SAR   G+ +  S   +T
Sbjct:  458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQ--GLREPARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNEHETSRRIKT 582          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.077e-22
Identity = 64/137 (46.72%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  155 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTML 562
            + + P+  +D I  L +  K +KE + LP+  PE F+  GI +P KGVL+ GPPGTGKTLLA+AVA     TF  VS S L  KY GE  ++VR LF MAR +AP+ IF+DEIDS  S R  S        V+  +L
Sbjct:  201 ISQNPNIRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELL 335          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 1.077e-22
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 2
Query:  167 PDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSAR--MQSGSRNGDSEVQRTML 562
            P+  ++ I GLD   + +KE +  PI+ P+LF   GI  P KG+LLYGPPGTGKTLLA+AVA     TF  +S S +V K+ G+  ++VR LF +AR HAPS IF+DE++S  S R     G   G   ++  +L
Sbjct:  249 PNIKWNDIIGLDAAKQLVKEAVVYPIRYPQLFT--GILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELL 381          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.406e-22
Identity = 61/155 (39.35%), Postives = 88/155 (56.77%), Query Frame = 2
Query:  155 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH---------------HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA----PSIIFMDEIDSTGSARMQSGSRNGDSEVQRTML 562
            +E+VPD +Y  IGGL +QI++I++ +ELP    EL+    +  PKGVLLYGPPG GKTL+A+AVA+                    F+ + G EL+ K++GE  R +R +F  ARE A    P I+F DE+DS    R    S + ++ V   +L
Sbjct:  243 LEEVPDVSYQDIGGLTRQIEQIRDAVELPFLHKELYREYALRPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAREAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRGTGVSSDVETTVVPQLL 397          
The following BLAST results are available for this feature:
BLAST of DY260087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
SPA5L_BOVIN6.312e-2339.85Spermatogenesis-associated protein 5-like protein ... [more]
SAP1_YEAST6.312e-2347.15Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 P... [more]
PEX6_PENCH6.312e-2342.03Peroxisomal biogenesis factor 6 OS=Penicillium chr... [more]
SPAST_PIG8.244e-2342.36Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
KATL2_MOUSE8.244e-2345.19Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
YMEL1_RAT1.077e-2246.49ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
YKX4_SCHPO1.077e-2244.88Uncharacterized AAA domain-containing protein C328... [more]
KTNA1_CHICK1.077e-2246.72Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
KATL2_HUMAN1.077e-2245.19Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
MPA_MYCLE1.406e-2239.35Proteasome-associated ATPase OS=Mycobacterium lepr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260087 ID=DY260087; Name=DY260087; organism=Citrus clementina; type=EST; length=1058bp
GGTTCATCCTGATTTTAAATATGTTGTTGATATTGATAAAAGTATTGATA
TAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTAT
GTTCTTCATTTGATCCTGCCAAGCAAAGTATATCCCCTGGTCAACCTTAT
GAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTG
ATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACCT
CCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCT
ATATGGACCACCTGGTACGGGCAAAACGCTGTTGGCTAGAGCTGTGGCTC
ATCATACTGATTGTACTTTCATCAGGGTTTCAGGTTCTGAATTAGTCCAG
AAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGC
AAGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTACCG
GATCCGCCCGAATGCAATCTGGCAGCCGAAATGGTGACAGTGAGGTGCAG
AGGACTATGCTGGAGCTGCCTCAACCAGCTTGATGGATTTGAAGCAACAA
ACAAAATTAAGGTTCTCATGGCGAAAAATCGAATTGATATTCTCGATCAA
GCTCCTTCCCAGCCCCGACGAATTGGCCGAAAAATTGAATTCCAAATCCC
AACGCAGAATCTCCTCCTGCTACCCGAAAAATCCTTCCCAAAGAAAGAAT
TACAGGCTGGCATTCATTTTGAAGAAAATGCCCCAGAAAAAAAATGGGTG
CATCTGGTGCGGAACTTTAGGGCTGGGTGGACCAAAACCCGGTTTTGTTG
CCCCCAGAAAGAAAAGGACCCCGGGTCCACCAGGAGAATTTTGAAAATTG
GCAGTGGCCCCAGGTCCGAAAAAAAAAAACCAAAAAAAAAACTGTCCCTT
CCAGAAACTCGGGCAACTAACCCCTTTCCCCGGCCCGGGCCCCGGCCTTC
TGCTTATCTTCCGCAACAAAATACCGCATGCCCCTTCACGGGACCCCCCC
AGTGGCCT
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