DY260087

Overview
NameDY260087
Unique NameDY260087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1058
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.399e-22
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  188 IGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQS 520
            I G D   + ++E++ LP   PELF  L  A  KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSIIF+DE+DS  S R  S
Sbjct:  485 IAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS 594          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.399e-22
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  188 IGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQS 520
            I G D   + ++E++ LP   PELF  L  A  KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSIIF+DE+DS  S R  S
Sbjct:  485 IAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS 594          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.399e-22
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  188 IGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQS 520
            I G D   + ++E++ LP   PELF  L  A  KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSIIF+DE+DS  S R  S
Sbjct:  485 IAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS 594          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.399e-22
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  188 IGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQS 520
            I G D   + ++E++ LP   PELF  L  A  KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSIIF+DE+DS  S R  S
Sbjct:  485 IAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS 594          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.399e-22
Identity = 63/137 (45.99%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  155 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTML 562
            + + P+  +D I  L +  K +KE + LP+  PE F+  GI +P KGVL+ GPPGTGKTLLA+AVA     TF  VS S L  KY GE  ++VR LF MAR ++P+ IF+DEIDS  S R  S        V+  +L
Sbjct:  200 ISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELL 334          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.399e-22
Identity = 63/137 (45.99%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  155 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTML 562
            + + P+  +D I  L +  K +KE + LP+  PE F+  GI +P KGVL+ GPPGTGKTLLA+AVA     TF  VS S L  KY GE  ++VR LF MAR ++P+ IF+DEIDS  S R  S        V+  +L
Sbjct:  200 ISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELL 334          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 3.133e-22
Identity = 59/129 (45.74%), Postives = 86/129 (66.67%), Query Frame = 2
Query:  179 YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTML 562
            ++ I GL      +KE +  P   P+LF+  G+ +P +G+LL+GPPGTGKT++A+AVA  ++ TF  VS S L+ KY+GE  ++VR LF MA++ +PSIIF+DEIDS  +AR  S + N  S   +T L
Sbjct:  470 WEDIAGLRNAKNSLKEAVVYPFLRPDLFK--GLREPVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTAR--SDNENESSRRIKTEL 594          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.133e-22
Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 2
Query:  155 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTM 559
            V+  P   +  I G D   + ++E++ LP   PELF  L  A  +G+LL+GPPG GKT+LA+AVA  ++ TF  +S + L  KY+GEG ++VR LF +ARE  PSIIF+DE+DS    R     R G+ +  R +
Sbjct:  320 VDSGPTVKFADIAGQDLAKQALQEIVILPSIRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCER-----REGEHDASRRL 448          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.133e-22
Identity = 57/152 (37.50%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  113 ILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLEL 568
            I  S V P +N     ++P  T+D +GGL    K++++ +E PIK    F  +GI+  +G+LL+GPPG  KT LA+A A+    +F  +S +EL   Y+GEG  ++R  F  AR  +PSIIF DE D     R    S N  +  +R +  L
Sbjct:  263 IAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTL 414          

HSP 2 Score: 87.4261 bits (215), Expect = 1.506e-16
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 2
Query:  188 IGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA----PSIIFMDEID 493
            IGG ++ ++ ++E+I  P + P    +LG+  P+G+LLYGPPGTGKT L RAV    D   I +S   + + + GE  +++RE F  A  HA    PS+IF+DEID
Sbjct:   24 IGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEID 129          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.343e-22
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 2
Query:  188 IGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSAR 511
            I G D   + ++E++ LP   PELF  L  A  KG+LL+GPPG GKTLLARAVA     TF+ +S + L  KY+G+G ++VR LF +AR   PSIIF+DE+DS  S R
Sbjct:  504 IAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER 610          
The following BLAST results are available for this feature:
BLAST of DY260087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
SPAST_DROSI2.399e-2250.45Spastin OS=Drosophila simulans GN=spas PE=3 SV=1[more]
SPAST_DROSE2.399e-2250.45Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROME2.399e-2250.45Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROER2.399e-2250.45Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
KTNA1_MACFA2.399e-2245.99Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN2.399e-2245.99Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
TBP6_YEAST3.133e-2245.74Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
SPAST_XENTR3.133e-2242.96Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
CD48B_ARATH3.133e-2237.50Cell division control protein 48 homolog B OS=Arab... [more]
SPAST_DROWI5.343e-2250.93Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260087 ID=DY260087; Name=DY260087; organism=Citrus clementina; type=EST; length=1058bp
GGTTCATCCTGATTTTAAATATGTTGTTGATATTGATAAAAGTATTGATA
TAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTAT
GTTCTTCATTTGATCCTGCCAAGCAAAGTATATCCCCTGGTCAACCTTAT
GAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTG
ATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACCT
CCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCT
ATATGGACCACCTGGTACGGGCAAAACGCTGTTGGCTAGAGCTGTGGCTC
ATCATACTGATTGTACTTTCATCAGGGTTTCAGGTTCTGAATTAGTCCAG
AAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGC
AAGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTACCG
GATCCGCCCGAATGCAATCTGGCAGCCGAAATGGTGACAGTGAGGTGCAG
AGGACTATGCTGGAGCTGCCTCAACCAGCTTGATGGATTTGAAGCAACAA
ACAAAATTAAGGTTCTCATGGCGAAAAATCGAATTGATATTCTCGATCAA
GCTCCTTCCCAGCCCCGACGAATTGGCCGAAAAATTGAATTCCAAATCCC
AACGCAGAATCTCCTCCTGCTACCCGAAAAATCCTTCCCAAAGAAAGAAT
TACAGGCTGGCATTCATTTTGAAGAAAATGCCCCAGAAAAAAAATGGGTG
CATCTGGTGCGGAACTTTAGGGCTGGGTGGACCAAAACCCGGTTTTGTTG
CCCCCAGAAAGAAAAGGACCCCGGGTCCACCAGGAGAATTTTGAAAATTG
GCAGTGGCCCCAGGTCCGAAAAAAAAAAACCAAAAAAAAAACTGTCCCTT
CCAGAAACTCGGGCAACTAACCCCTTTCCCCGGCCCGGGCCCCGGCCTTC
TGCTTATCTTCCGCAACAAAATACCGCATGCCCCTTCACGGGACCCCCCC
AGTGGCCT
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