DY260087
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 1.900e-19 Identity = 58/139 (41.73%), Postives = 81/139 (58.27%), Query Frame = 2 Query: 155 VEKVPDST---YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTM 559 ++++ DST D + G ++E + LP P LF G+ QP KG+LL+GPPG GKTLLA+AVA + F +S S L K++G+ + +R LF +AR PSIIF+DEIDS R + D+EV R M Sbjct: 257 LDEILDSTGVRMDDVAGCHSAKATLEEAVILPALNPNLFS--GLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCERSEK-----DAEVSRRM 388
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 2.482e-19 Identity = 58/139 (41.73%), Postives = 82/139 (58.99%), Query Frame = 2 Query: 155 VEKVPDST---YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTM 559 +++V D+T D + G ++E + LP P LF+ G+ QP KG+LL+GPPG GKTLLA+AVA + F +S S L K++G+ + +R LF +AR PSIIF+DEIDS R + D+EV R M Sbjct: 227 LDEVLDNTGVRMDDVAGCHSAKAALEEAVILPALNPNLFK--GLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEK-----DAEVSRRM 358
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 3.242e-19 Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 2 Query: 179 YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 496 +D IGG ++ + E+K+ I LP++ S ++ P+G+LLYGPPG GKTLLA+AVA C FI + S L K+ GE ++ +F +A++ P+IIF+DEIDS Sbjct: 82 WDEIGGCEELVAELKDRIILPLRFASQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDS 187
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 4.234e-19 Identity = 45/111 (40.54%), Postives = 71/111 (63.96%), Query Frame = 2 Query: 179 YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSAR 511 ++ I GL+ E I +P++ P+LF + P+GVLL+GPPGTGKTL+A+++A F ++ S L K++G+ ++V+ LF +A H P+IIF+DE+DS S R Sbjct: 249 WEDIAGLESAKSTFLEAIIMPLRRPDLFTGVR-CPPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR 358
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 6.059e-19 Identity = 51/135 (37.78%), Postives = 71/135 (52.59%), Query Frame = 2 Query: 188 IGGLDQQIKEI-KEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAREH--------APSIIFMDEIDSTGSARMQSGSRNGDSEVQRTML 562 IGGLD + I + + PPE E LG+ +G+LL+GPPGTGKTL+AR + + + V+G +++ KY+GE VR+LF A E II DEID+ Q GS G S V T++ Sbjct: 297 IGGLDTEFSHIFRRAFASRVFPPEFIEQLGMKHVRGILLFGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICK---QRGSMAGSSSVHDTVV 428 HSP 2 Score: 35.039 bits (79), Expect = 6.059e-19 Identity = 16/46 (34.78%), Postives = 29/46 (63.04%), Query Frame = 3 Query: 570 LNQLDGFEATNKIKVLMAKNRIDILDQAPSQPRRIGRKIEFQIPTQ 707 L+++DG E N I V+ NR D++D+A +P R+ ++E +P + Sbjct: 432 LSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDE 477
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 6.164e-19 Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 176 TYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 496 T+ IGGLD I ++ E + P+ PE++ + + Q P GVLLYGPPG GKT+LA+A+A + FI + S ++ K+ GE +++V +F +A + P IIF+DEIDS Sbjct: 89 TFQDIGGLDPLISDLHESVIYPLMMPEVYSNSPLLQAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDS 196 HSP 2 Score: 20.4014 bits (41), Expect = 6.164e-19 Identity = 8/24 (33.33%), Postives = 14/24 (58.33%), Query Frame = 3 Query: 582 DGFEATNKIKVLMAKNRIDILDQA 653 DG ++ ++ A NRI+ +D A Sbjct: 221 DGLLNNGRVMIIGATNRINDIDDA 244
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.885e-19 Identity = 49/126 (38.89%), Postives = 66/126 (52.38%), Query Frame = 2 Query: 188 IGGLDQQIKEI-KEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMA--------REHAPSIIFMDEIDSTGSARMQSGSRNG 535 IGGLD + I + + PP + E LGI KG+LLYGPPGTGKTL+AR + + + V+G E++ KY+G+ VR+LF A E II DE+D+ R SG G Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGSSGGDTG 396 HSP 2 Score: 35.039 bits (79), Expect = 7.885e-19 Identity = 23/83 (27.71%), Postives = 41/83 (49.40%), Query Frame = 3 Query: 570 LNQLDGFEATNKIKVLMAKNRIDILDQAPSQPRRIGRKIEFQIPTQNLLLLPEKSFPKKELQAGIHFEENAPEKKWVHLVRNF 818 L ++DG + N I V+ NR D++D+A +P R+ +E +P ++ L K + GI E + ++ L +NF Sbjct: 406 LAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGI-LENDVDMEELASLTKNF 487
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 9.432e-19 Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 2 Query: 176 TYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 496 T+ + GLD+ I E+++ + LP + LF + QP KGVLLYGPPG GKTL+A+A A + C FI + S L K+ GE ++ +F +A + P IIF+DEIDS Sbjct: 92 TWRDVAGLDEIISEMQDTVILPFQKRHLFSGSKLLQPPKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDS 199
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.257e-18 Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 2 Query: 188 IGGLDQQIKEI-KEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAR--------EHAPSIIFMDEIDSTGSARMQSGSRNGDSEV 547 IGGLD + ++I + I PP + + LG+ KG+LLYGPPGTGKTL+AR + + + VSG ++ KY+G+ +R LF A + II DE+D+ +R GSR GDS V Sbjct: 224 IGGLDAEFRDIFRRAFSSRIFPPAIVKKLGVNHVKGMLLYGPPGTGKTLIARQIGKMLNGREPKVVSGPSILNKYVGQSEENIRMLFRDAEIEQKAKGDDSGLHIIIFDELDAICKSR---GSRQGDSGV 350 HSP 2 Score: 35.039 bits (79), Expect = 2.257e-18 Identity = 16/47 (34.04%), Postives = 28/47 (59.57%), Query Frame = 3 Query: 570 LNQLDGFEATNKIKVLMAKNRIDILDQAPSQPRRIGRKIEFQIPTQN 710 L +DG E+ N I V+ NR D++D+A +P R+ +E +P ++ Sbjct: 359 LAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEH 405
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.114e-18 Identity = 54/140 (38.57%), Postives = 74/140 (52.86%), Query Frame = 2 Query: 149 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLEL 568 +K++K D +D IGGL + E +E P K +F S + G+LLYG PG GKTLLA AVA FI + G E++ KYIG + VRELF A+ P I+F DE DS R + D V + + ++ Sbjct: 789 VKLQK-SDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCPLRLRSGILLYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERAQAAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQMLTQM 927 The following BLAST results are available for this feature:
BLAST of DY260087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 372
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260087 ID=DY260087; Name=DY260087; organism=Citrus clementina; type=EST; length=1058bpback to top |