DY260087

Overview
NameDY260087
Unique NameDY260087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1058
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.900e-19
Identity = 58/139 (41.73%), Postives = 81/139 (58.27%), Query Frame = 2
Query:  155 VEKVPDST---YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTM 559
            ++++ DST    D + G       ++E + LP   P LF   G+ QP KG+LL+GPPG GKTLLA+AVA  +   F  +S S L  K++G+  + +R LF +AR   PSIIF+DEIDS    R +      D+EV R M
Sbjct:  257 LDEILDSTGVRMDDVAGCHSAKATLEEAVILPALNPNLFS--GLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCERSEK-----DAEVSRRM 388          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.482e-19
Identity = 58/139 (41.73%), Postives = 82/139 (58.99%), Query Frame = 2
Query:  155 VEKVPDST---YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTM 559
            +++V D+T    D + G       ++E + LP   P LF+  G+ QP KG+LL+GPPG GKTLLA+AVA  +   F  +S S L  K++G+  + +R LF +AR   PSIIF+DEIDS    R +      D+EV R M
Sbjct:  227 LDEVLDNTGVRMDDVAGCHSAKAALEEAVILPALNPNLFK--GLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEK-----DAEVSRRM 358          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 3.242e-19
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  179 YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 496
            +D IGG ++ + E+K+ I LP++      S  ++ P+G+LLYGPPG GKTLLA+AVA    C FI +  S L  K+ GE  ++   +F +A++  P+IIF+DEIDS
Sbjct:   82 WDEIGGCEELVAELKDRIILPLRFASQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDS 187          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 4.234e-19
Identity = 45/111 (40.54%), Postives = 71/111 (63.96%), Query Frame = 2
Query:  179 YDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSAR 511
            ++ I GL+       E I +P++ P+LF  +    P+GVLL+GPPGTGKTL+A+++A      F  ++ S L  K++G+  ++V+ LF +A  H P+IIF+DE+DS  S R
Sbjct:  249 WEDIAGLESAKSTFLEAIIMPLRRPDLFTGVR-CPPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR 358          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.059e-19
Identity = 51/135 (37.78%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  188 IGGLDQQIKEI-KEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAREH--------APSIIFMDEIDSTGSARMQSGSRNGDSEVQRTML 562
            IGGLD +   I +      + PPE  E LG+   +G+LL+GPPGTGKTL+AR +    +    + V+G +++ KY+GE    VR+LF  A E            II  DEID+      Q GS  G S V  T++
Sbjct:  297 IGGLDTEFSHIFRRAFASRVFPPEFIEQLGMKHVRGILLFGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICK---QRGSMAGSSSVHDTVV 428          

HSP 2 Score: 35.039 bits (79), Expect = 6.059e-19
Identity = 16/46 (34.78%), Postives = 29/46 (63.04%), Query Frame = 3
Query:  570 LNQLDGFEATNKIKVLMAKNRIDILDQAPSQPRRIGRKIEFQIPTQ 707
            L+++DG E  N I V+   NR D++D+A  +P R+  ++E  +P +
Sbjct:  432 LSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDE 477          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 6.164e-19
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  176 TYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 496
            T+  IGGLD  I ++ E +  P+  PE++ +  + Q P GVLLYGPPG GKT+LA+A+A  +   FI +  S ++ K+ GE +++V  +F +A +  P IIF+DEIDS
Sbjct:   89 TFQDIGGLDPLISDLHESVIYPLMMPEVYSNSPLLQAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDS 196          

HSP 2 Score: 20.4014 bits (41), Expect = 6.164e-19
Identity = 8/24 (33.33%), Postives = 14/24 (58.33%), Query Frame = 3
Query:  582 DGFEATNKIKVLMAKNRIDILDQA 653
            DG     ++ ++ A NRI+ +D A
Sbjct:  221 DGLLNNGRVMIIGATNRINDIDDA 244          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.885e-19
Identity = 49/126 (38.89%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  188 IGGLDQQIKEI-KEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMA--------REHAPSIIFMDEIDSTGSARMQSGSRNG 535
            IGGLD +   I +      + PP + E LGI   KG+LLYGPPGTGKTL+AR +    +    + V+G E++ KY+G+    VR+LF  A         E    II  DE+D+    R  SG   G
Sbjct:  271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGSSGGDTG 396          

HSP 2 Score: 35.039 bits (79), Expect = 7.885e-19
Identity = 23/83 (27.71%), Postives = 41/83 (49.40%), Query Frame = 3
Query:  570 LNQLDGFEATNKIKVLMAKNRIDILDQAPSQPRRIGRKIEFQIPTQNLLLLPEKSFPKKELQAGIHFEENAPEKKWVHLVRNF 818
            L ++DG +  N I V+   NR D++D+A  +P R+   +E  +P ++  L   K    +    GI  E +   ++   L +NF
Sbjct:  406 LAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGI-LENDVDMEELASLTKNF 487          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 9.432e-19
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 2
Query:  176 TYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 496
            T+  + GLD+ I E+++ + LP +   LF    + QP KGVLLYGPPG GKTL+A+A A  + C FI +  S L  K+ GE  ++   +F +A +  P IIF+DEIDS
Sbjct:   92 TWRDVAGLDEIISEMQDTVILPFQKRHLFSGSKLLQPPKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDS 199          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.257e-18
Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  188 IGGLDQQIKEI-KEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMAR--------EHAPSIIFMDEIDSTGSARMQSGSRNGDSEV 547
            IGGLD + ++I +      I PP + + LG+   KG+LLYGPPGTGKTL+AR +    +    + VSG  ++ KY+G+    +R LF  A         +    II  DE+D+   +R   GSR GDS V
Sbjct:  224 IGGLDAEFRDIFRRAFSSRIFPPAIVKKLGVNHVKGMLLYGPPGTGKTLIARQIGKMLNGREPKVVSGPSILNKYVGQSEENIRMLFRDAEIEQKAKGDDSGLHIIIFDELDAICKSR---GSRQGDSGV 350          

HSP 2 Score: 35.039 bits (79), Expect = 2.257e-18
Identity = 16/47 (34.04%), Postives = 28/47 (59.57%), Query Frame = 3
Query:  570 LNQLDGFEATNKIKVLMAKNRIDILDQAPSQPRRIGRKIEFQIPTQN 710
            L  +DG E+ N I V+   NR D++D+A  +P R+   +E  +P ++
Sbjct:  359 LAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEH 405          
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.114e-18
Identity = 54/140 (38.57%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  149 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLEL 568
            +K++K  D  +D IGGL      + E +E P K   +F S  +    G+LLYG PG GKTLLA AVA      FI + G E++ KYIG   + VRELF  A+   P I+F DE DS    R    +   D  V + + ++
Sbjct:  789 VKLQK-SDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCPLRLRSGILLYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERAQAAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQMLTQM 927          
The following BLAST results are available for this feature:
BLAST of DY260087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
SPAST_CAEBR1.900e-1941.73Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
SPAST_CAEEL2.482e-1941.73Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
MSP1_CAEEL3.242e-1944.34Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
FIGL1_DROME4.234e-1940.54Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
NSF_CAEEL6.059e-1937.78Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
MSP1_YEAST6.164e-1943.52Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
SEC18_SCHPO7.885e-1938.89Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
ATD1A_DANRE9.432e-1944.44ATPase family AAA domain-containing protein 1-A OS... [more]
NSF_DICDI2.257e-1838.46Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
PEX1_PICPA6.114e-1838.57Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260087 ID=DY260087; Name=DY260087; organism=Citrus clementina; type=EST; length=1058bp
GGTTCATCCTGATTTTAAATATGTTGTTGATATTGATAAAAGTATTGATA
TAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTAT
GTTCTTCATTTGATCCTGCCAAGCAAAGTATATCCCCTGGTCAACCTTAT
GAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTG
ATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACCT
CCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCT
ATATGGACCACCTGGTACGGGCAAAACGCTGTTGGCTAGAGCTGTGGCTC
ATCATACTGATTGTACTTTCATCAGGGTTTCAGGTTCTGAATTAGTCCAG
AAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGC
AAGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTACCG
GATCCGCCCGAATGCAATCTGGCAGCCGAAATGGTGACAGTGAGGTGCAG
AGGACTATGCTGGAGCTGCCTCAACCAGCTTGATGGATTTGAAGCAACAA
ACAAAATTAAGGTTCTCATGGCGAAAAATCGAATTGATATTCTCGATCAA
GCTCCTTCCCAGCCCCGACGAATTGGCCGAAAAATTGAATTCCAAATCCC
AACGCAGAATCTCCTCCTGCTACCCGAAAAATCCTTCCCAAAGAAAGAAT
TACAGGCTGGCATTCATTTTGAAGAAAATGCCCCAGAAAAAAAATGGGTG
CATCTGGTGCGGAACTTTAGGGCTGGGTGGACCAAAACCCGGTTTTGTTG
CCCCCAGAAAGAAAAGGACCCCGGGTCCACCAGGAGAATTTTGAAAATTG
GCAGTGGCCCCAGGTCCGAAAAAAAAAAACCAAAAAAAAAACTGTCCCTT
CCAGAAACTCGGGCAACTAACCCCTTTCCCCGGCCCGGGCCCCGGCCTTC
TGCTTATCTTCCGCAACAAAATACCGCATGCCCCTTCACGGGACCCCCCC
AGTGGCCT
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