DY260087

Overview
NameDY260087
Unique NameDY260087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1058
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: SEC18_YEAST (Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae GN=SEC18 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 3.140e-14
Identity = 47/126 (37.30%), Postives = 66/126 (52.38%), Query Frame = 2 
Query:  188 IGGLDQQIKEI-KEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELF--------VMAREHAPSIIFMDEIDSTGSARMQSGSRNG 535
            +GGLD++  +I +      I PP + E LGI+  KG+LLYGPPGTGKTL+AR +    +    + V+G E++ KY+G     +R LF            E +  II  DE+DS    R   G   G
Sbjct:  241 VGGLDKEFTKIFRRAFASRIFPPSVIEKLGISHVKGLLLYGPPGTGKTLIARKIGTMLNAKEPKIVNGPEILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFDELDSVFKQRGSRGDGTG 366
[Close]
BLAST of DY260087 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.660e-14
Identity = 38/118 (32.20%), Postives = 64/118 (54.24%), Query Frame = 2 
Query:  176 TYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSR 529
            T+  IGG++   +E+  V  L +K      S     P G L  GPPGTGKTL+A+A+++  +  ++ V GS+   +  G  +  V +LF   +  +P I+++DEIDS    R ++  +
Sbjct:  347 TFRDIGGMESLKQELATVAFL-LKQKNYSNSY----PMGYLFAGPPGTGKTLMAKAMSYEAETPYLYVEGSQFRCREEGVANARVDDLFKQIQNISPCILYIDEIDSIAERREEANKQ 459

HSP 2 Score: 35.039 bits (79), Expect = 3.660e-14
Identity = 16/41 (39.02%), Postives = 25/41 (60.98%), Query Frame = 3 
Query:  579 LDGFEATNKIKVLMAKNRIDILDQAPSQPRRIGRKIEFQIP 701
            +DG++  N + ++ A NRI+ LD A  +P R  R+I F  P
Sbjct:  493 MDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPP 533
The following BLAST results are available for this feature:
BLAST of DY260087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
SEC18_YEAST3.140e-1437.30Vesicular-fusion protein SEC18 OS=Saccharomyces ce... [more]
YCF2_MESVI3.660e-1432.20Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YE07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260087 ID=DY260087; Name=DY260087; organism=Citrus clementina; type=EST; length=1058bp
GGTTCATCCTGATTTTAAATATGTTGTTGATATTGATAAAAGTATTGATA
TAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTAT
GTTCTTCATTTGATCCTGCCAAGCAAAGTATATCCCCTGGTCAACCTTAT
GAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTG
ATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACCT
CCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCT
ATATGGACCACCTGGTACGGGCAAAACGCTGTTGGCTAGAGCTGTGGCTC
ATCATACTGATTGTACTTTCATCAGGGTTTCAGGTTCTGAATTAGTCCAG
AAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGC
AAGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTACCG
GATCCGCCCGAATGCAATCTGGCAGCCGAAATGGTGACAGTGAGGTGCAG
AGGACTATGCTGGAGCTGCCTCAACCAGCTTGATGGATTTGAAGCAACAA
ACAAAATTAAGGTTCTCATGGCGAAAAATCGAATTGATATTCTCGATCAA
GCTCCTTCCCAGCCCCGACGAATTGGCCGAAAAATTGAATTCCAAATCCC
AACGCAGAATCTCCTCCTGCTACCCGAAAAATCCTTCCCAAAGAAAGAAT
TACAGGCTGGCATTCATTTTGAAGAAAATGCCCCAGAAAAAAAATGGGTG
CATCTGGTGCGGAACTTTAGGGCTGGGTGGACCAAAACCCGGTTTTGTTG
CCCCCAGAAAGAAAAGGACCCCGGGTCCACCAGGAGAATTTTGAAAATTG
GCAGTGGCCCCAGGTCCGAAAAAAAAAAACCAAAAAAAAAACTGTCCCTT
CCAGAAACTCGGGCAACTAACCCCTTTCCCCGGCCCGGGCCCCGGCCTTC
TGCTTATCTTCCGCAACAAAATACCGCATGCCCCTTCACGGGACCCCCCC
AGTGGCCT
back to top