DY260090

Overview
NameDY260090
Unique NameDY260090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1020
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260090 vs. ExPASy Swiss-Prot
Match: LLDD_YERPB (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.377e-26
Identity = 83/274 (30.29%), Postives = 122/274 (44.53%), Query Frame = 2
Query:  116 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLKWLRSITNLPILNKGILTRENGIKAVEVGVAGIIVPNPGTPQLN 865
            +++  A+  LP   + +  GGA +E TL+ N      I  R R+L ++S + L T +     + P+++ P     +    GEV  ARAA        LS  S   IEEVA +     ++QLYV K R      + RA+  G K LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDL+W+R     P++ KGIL  E+   AV+ G  GI+V N G  QL+
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRDAHSGMSGPNAAARRLLQAIAHPQWAWDVGLNGKPHDLGNISAYLGKPTTLEDYMGWIATNFDPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLD 281          
BLAST of DY260090 vs. ExPASy Swiss-Prot
Match: LLDD_YERPA (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.377e-26
Identity = 83/274 (30.29%), Postives = 122/274 (44.53%), Query Frame = 2
Query:  116 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLKWLRSITNLPILNKGILTRENGIKAVEVGVAGIIVPNPGTPQLN 865
            +++  A+  LP   + +  GGA +E TL+ N      I  R R+L ++S + L T +     + P+++ P     +    GEV  ARAA        LS  S   IEEVA +     ++QLYV K R      + RA+  G K LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDL+W+R     P++ KGIL  E+   AV+ G  GI+V N G  QL+
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRDAHSGMSGPNAAARRLLQAIAHPQWAWDVGLNGKPHDLGNISAYLGKPTTLEDYMGWIATNFDPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLD 281          
BLAST of DY260090 vs. ExPASy Swiss-Prot
Match: LLDD_YERP3 (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.377e-26
Identity = 83/274 (30.29%), Postives = 122/274 (44.53%), Query Frame = 2
Query:  116 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLKWLRSITNLPILNKGILTRENGIKAVEVGVAGIIVPNPGTPQLN 865
            +++  A+  LP   + +  GGA +E TL+ N      I  R R+L ++S + L T +     + P+++ P     +    GEV  ARAA        LS  S   IEEVA +     ++QLYV K R      + RA+  G K LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDL+W+R     P++ KGIL  E+   AV+ G  GI+V N G  QL+
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRDAHSGMSGPNAAARRLLQAIAHPQWAWDVGLNGKPHDLGNISAYLGKPTTLEDYMGWIATNFDPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLD 281          
BLAST of DY260090 vs. ExPASy Swiss-Prot
Match: LA2M_MYCSM (Lactate 2-monooxygenase OS=Mycobacterium smegmatis PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 5.761e-26
Identity = 82/278 (29.50%), Postives = 137/278 (49.28%), Query Frame = 2
Query:  101 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLA--NPEGEVATARAAASCNTIMVLSFTSSSTIEEVAA-SSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDA--------------------SLSWKDLKWLRSITNLPILNKGILTRENGIKAVEVGVAGIIVPNPGTPQLN 865
            P++  +++  A+ ALP     + AGG+ DEHT + NVEAF      PR+L+  +  DLS  +     +AP+  AP     L   +  G+ A+A+A+A      + S  + S++E++   + +   ++QLY  + RD+  + ++RAE  G+  LV+T DT   G R  D    +       L GL  T   +D     +  A+  ++A                    S++W+D+ W+RSIT +P++ KGI   ++  +AV+ GV GI   N G  Q N
Sbjct:   24 PMSYADWEAHAQQALPPGVLSYVAGGSGDEHTQRANVEAFKHWGLMPRMLMAATERDLSVELWGKTWAAPMFFAPIGVIALCAQDGHGDAASAQASARTGVPYITSTLAVSSLEDIRKHAGDTPAYFQLYYPEDRDLAESFIRRAEEAGYDGLVITLDTWIFGWRPRD----LTISNFPFLRGLCLTNYVTDPVFQKKFKAHSGVEAEGLRDNPRLAADFWHGLFGHSVTWEDIDWVRSITKMPVILKGIQHPDDARRAVDSGVDGIYCSNHGGRQAN 297          
BLAST of DY260090 vs. ExPASy Swiss-Prot
Match: LLDD_BARQU (L-lactate dehydrogenase [cytochrome] OS=Bartonella quintana GN=lldD PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.826e-26
Identity = 81/282 (28.72%), Postives = 127/282 (45.04%), Query Frame = 2
Query:  116 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---------------------------PLKNLEGLLSTKVSSD-----TGSNFEADANETMDASLSWKDLKWLRSITNLPILNKGILTRENGIKAVEVGVAGIIVPNPGTPQLN 865
            ++++ A+  LP   + +  GGA  E T++ N      +  R RIL  V  +DLS  + D +++ PI++AP     +    GEV  ARAA +      LS  S  ++ EV A   +  ++QLYV K R     +++R+   G + LV T D P  G R  D  + M  P                            L N+   L  K++ +      G+NF        D S+ W DL+W+R      ++ KGIL  ++  +AV+ G  GI+V N G  QL+
Sbjct:    8 DYRKAAKRRLPPFLFHYIDGGAYAEETMRRNYADLQALALRQRILRQVGEVDLSIKLFDQRLNLPIVLAPVGLTGMYARRGEVKAARAAVAKGIPFTLSSVSVCSLAEVHAEVGSGFWFQLYVLKDRGFMRDVLERSWLAGVRTLVFTVDMPVPGARYRDAHSGMSGPYAGLRRILQAVVHPHWAWNVGIMGRPHDLGNVSTYLQKKITLEDYVGWLGANF--------DPSIGWSDLQWIRDFWKGKMILKGILDPQDAREAVQFGADGIVVSNHGGRQLD 281          
BLAST of DY260090 vs. ExPASy Swiss-Prot
Match: LLDD_BART1 (L-lactate dehydrogenase [cytochrome] OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=lldD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.676e-25
Identity = 83/282 (29.43%), Postives = 123/282 (43.62%), Query Frame = 2
Query:  116 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---------------------------PLKNLEGLLSTKVSSD-----TGSNFEADANETMDASLSWKDLKWLRSITNLPILNKGILTRENGIKAVEVGVAGIIVPNPGTPQLN 865
            ++++ A+  LP   + +  GGA  E TL+ N      +  R RIL  V  +DLS  + + ++  PI++AP     +    GEV  A AA +      LS  S   I EV  +     ++QLYV K R      ++RA  +G + LV T D P  G R  D  + M  P                            L N+   L  K++ D      G+NF        D S+ W DL+W+R      ++ KGIL  E+  +AV+ G  GI+V N G  QL+
Sbjct:    8 DYRKAAKRRLPPFLFHYIDGGAYAEETLRRNCSDLQALALRQRILRQVGGVDLSIKLFEQRLDLPIVLAPVGLTGMYARRGEVQAAHAATAKGIPFTLSSVSVCPIAEVQEAVGGGFWFQLYVLKDRGFMRDALERAWASGVRTLVFTVDMPIPGARYRDAHSGMSGPYAGLRRFLQAFTHPHWAWNVGIMGRPHDLGNVSTYLEKKIALDDYVGWLGANF--------DPSIGWHDLQWIRDFWKGKMILKGILDPEDAREAVQFGADGIVVSNHGGRQLD 281          
BLAST of DY260090 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.049e-23
Identity = 90/307 (29.32%), Postives = 146/307 (47.56%), Query Frame = 2
Query:  104 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEV-AASSNAVRFYQLY--VFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKN---KMITPPLKNLEGLLSTKV-----SSDTGSNFEADANETM---------DASLSWKDLKWLRSITNLPILNKGILTRENGIKAVEVGVAGIIVPNPGTPQLN*IPAPFSLRKRWFWPLKERIPILRKGECRQGTN 964
            V+   +++LA   + K    +  G A    T  +N+E+F + +  P  L+     DLSTT+   K   PI +AP    K+ NPEGE  +  AA   +   ++S  S+++ E++  AS    R+YQLY      +DIT +L+ RA++ G + L++T DT  LG R +D+ N     + P    +E   S  V         G   E +  E             S  W+DLK+LR   + PI+ KGI+   +  KAVE G+ GI+V N G  Q +   A  ++  +    + +++ +L     R G +
Sbjct:   34 VDGRHWEQLAVERMTKDAAGYVYGCAGKRETYDKNMESFKKWSIIPNRLIKSGFPDLSTTVFGQKYPFPIALAPVGVQKIFNPEGESGSCAAATREHIPYIISTASATSFEDIEKASGPGERWYQLYWPSNDHQDITISLLNRAKKTGCRVLIVTLDTFILGWRPSDMDNGYDPFLNPDSIGVEHGFSDPVFRKQFKEKHGVEVEENMLEAAKEFAGIVFPGISHDWEDLKFLRKHWDGPIVLKGIMNVPDAKKAVEYGMQGIVVSNHGGRQQDGGVASLTMLPKIVDAVGDKLDVLFDSGVRSGAD 340          
The following BLAST results are available for this feature:
BLAST of DY260090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_YERPB3.377e-2630.29L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPA3.377e-2630.29L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERP33.377e-2630.29L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LA2M_MYCSM5.761e-2629.50Lactate 2-monooxygenase OS=Mycobacterium smegmatis... [more]
LLDD_BARQU9.826e-2628.72L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_BART11.676e-2529.43L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
YKN3_SCHPO2.049e-2329.32Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260090 ID=DY260090; Name=DY260090; organism=Citrus clementina; type=EST; length=1020bp
TGACTTTAACTCTTCCCCCGACTCACTGTTGTAATCTGCTTCACGATCGA
CCTTCATCAGTTGAAATTTTTAGTCATTCGGGTTTCACATGGCAGCTGAA
CCTGTTAATTTGAATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTCCAAA
AATGTATTATGATTTCTACGCTGGTGGAGCAGAAGATGAACATACCCTAA
AAGAGAATGTGGAAGCCTTTCATAGAATTACGTTTCGGCCAAGAATTCTT
GTCGATGTCAGCAGAATAGATTTATCGACTACTATACTTGATTACAAAAT
CTCGGCTCCCATTATCATTGCTCCAACGGCTTTCCATAAGCTTGCAAACC
CTGAAGGAGAAGTAGCCACAGCCAGAGCAGCAGCTTCATGTAACACCATA
ATGGTTTTATCCTTCACATCTAGCAGCACCATAGAGGAGGTTGCGGCCAG
CTCCAATGCTGTTCGCTTCTATCAATTATATGTATTCAAGAAACGAGATA
TAACAGCTACTCTAGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCTT
GTCCTAACTGCTGATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAAA
GAACAAAATGATTACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCAA
CCAAAGTCAGCTCTGATACAGGTTCGAATTTTGAAGCTGATGCCAATGAG
ACCATGGATGCCTCTTTAAGTTGGAAGGATTTAAAATGGCTAAGATCTAT
TACAAACTTACCAATTTTGAACAAGGGGATACTTACCCGTGAAAATGGCA
TAAAAGCTGTGGAAGTAGGTGTTGCTGGGATTATTGTCCCCAATCCCGGA
ACTCCACAGTTAAATTAAATCCCGGCCCCATTTTCGCTCCGGAAAAGGTG
GTTCTGGCCGTTAAAGGAAAGAATTCCCATTCTTAGGAAGGGGGAATGCC
GGCAAGGAACAAATGGTTTCCAAGGCATTGGGCCCCCCGGTGCCCCAACC
CGTACTTTTTTGGAAAGGGC
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