DY260095

Overview
NameDY260095
Unique NameDY260095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:248..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.533e-43
Identity = 91/169 (53.85%), Postives = 107/169 (63.31%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            +FLGLDNAGKTTLL MLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:   29 VFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.226e-43
Identity = 93/169 (55.03%), Postives = 111/169 (65.68%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK             +VPFL+LGNKID+P A  E EL+  LGL N TTGK    L + + RP+EV+M S+V + GYG+GFKWLSQYI
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHVPFLILGNKIDVPTAVGEMELKSALGLYN-TTGKDTGKLPEGS-RPIEVYMVSVVMRSGYGEGFKWLSQYI 190          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 7.226e-43
Identity = 92/169 (54.44%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEELSIG +KF  FDLGGH  ARR+W                   ER  ESK             N PF++LGNKID P A SE++LR  LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   20 LFLGLDNAGKTTLLHMLKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 185          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.226e-43
Identity = 95/169 (56.21%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK             +VPFL+LGNKID   A  E EL+  LGL N TTGK    L +   RP+EVFM S+V +MGYGDGFKWLSQYI
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYN-TTGKDTGKLPEGQ-RPIEVFMVSVVMRMGYGDGFKWLSQYI 190          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.610e-42
Identity = 91/169 (53.85%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEELS+G +KF  FDLGGHQ ARR+W                   ER  E+K              VPF+VLGNKID P A SE+ELR  LGL   TTGKG+V L    +RP+EVFMCS+V + GYG+  +WLSQY+
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGLWQ-TTGKGRVPL--EGIRPIEVFMCSVVMRQGYGEAIRWLSQYV 189          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.103e-42
Identity = 93/169 (55.03%), Postives = 108/169 (63.91%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK              VPF++LGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S+V + GYGD FKWLSQYI
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPEGQ-RPIEVFMVSVVMRSGYGDAFKWLSQYI 190          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.103e-42
Identity = 91/169 (53.85%), Postives = 110/169 (65.09%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   E F ESK              VPFL+LGNKID P A SE+++R+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDDVRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 6.117e-42
Identity = 92/169 (54.44%), Postives = 108/169 (63.91%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK              VPF++LGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S+V + GYG+ FKWLSQYI
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPE-GTRPIEVFMVSVVMRSGYGEAFKWLSQYI 190          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.043e-41
Identity = 94/169 (55.62%), Postives = 106/169 (62.72%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEELSIG ++F  FDLGGH+ ARRVW                   ERF ES+              VP LVLGNKID   A SE ELR+ LGL   TTGK KV L +   RPLEVF CSI  + GYG+G +WLSQYI
Sbjct:   24 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGLMT-TTGKDKVQLVEGQ-RPLEVFTCSIYLRQGYGEGIRWLSQYI 190          
BLAST of DY260095 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.325e-41
Identity = 90/169 (53.25%), Postives = 112/169 (66.27%), Query Frame = 2
Query:    2 LFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 508
            LFLGLDNAGKTTLL +LKD RL  + PT +PTSEEL++G I+FKAFDLGGH+ ARR+W                   +RF ESKK            NVPFL+LGNK+DI    SEE+ R  LGL+  TTGKGK  L  + VRP+EVFMCS+V++ GY +GF+WL+ Y+
Sbjct:   24 LFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELANVPFLILGNKVDIG-NTSEEKFRASLGLTQ-TTGKGKTTL--NGVRPIEVFMCSVVKRYGYAEGFRWLANYL 188          
The following BLAST results are available for this feature:
BLAST of DY260095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SAR1A_MOUSE5.533e-4353.85GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1_PICST7.226e-4355.03Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]
SAR1_PHANO7.226e-4354.44Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_DEBHA7.226e-4356.21Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1_NEUCR1.610e-4253.85Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_LODEL2.103e-4255.03Small COPII coat GTPase SAR1 OS=Lodderomyces elong... [more]
SAR1_ASPNG2.103e-4253.85Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_CANAL6.117e-4254.44Small COPII coat GTPase SAR1 OS=Candida albicans G... [more]
SAR1_PICPG1.043e-4155.62Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
SAR1A_DICDI2.325e-4153.25GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260095 ID=DY260095; Name=DY260095; organism=Citrus clementina; type=EST; length=887bp
CTTGTTTTTAGGGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGT
TGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGTATCCCACATCG
GAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGG
CCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATG
CTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCA
AAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCC
TTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGAGG
AAGAGTTGCGTTACCACCTTGGCCTATCAAATTTCACCACTGGGAAGGGG
AAGGTTAATCTAGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATGTG
TAGCATAGTTCGCAAAATGGGATATGGTGATGGTTTCAAATGGCTCTCTC
AATACATTAAGTAGGGTAATGCTCAGGAAGTGTTATAGAAGTAATGCAGA
TTTCAAAATTTCACCCATGCCTACTACACCCTGTTTCACCAAAAAAATTG
TGTTTATCTACTTGTTTGATCTTTTATTCTGTTAGTGGGACTTGAACCAG
AGGTACTGTGTTTTGAGTCCGGTTGGAAGGTGGTAGTTATGTTACTGCTC
CGTAAAATTACCTGTGGATAGCAGGTCCTTAACCGGGAATTGAAGTTTTG
TCAATTACCTTGCCCTATTGCCAGGTCCGCCTGGGAACCCAAATTAAAAT
ATTTATTGGTAATATTTTGTTAAGGTTAATTTCAATTCCAAAACATCCCT
TAAATTATTGGAAACCTTAATTACCTTTCTAATTGGG
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