DY260098

Overview
NameDY260098
Unique NameDY260098
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length971
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260098 vs. ExPASy Swiss-Prot
Match: PMM_CAEEL (Probable phosphomannomutase OS=Caenorhabditis elegans GN=F52B11.2 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.932e-56
Identity = 112/223 (50.22%), Postives = 140/223 (62.78%), Query Frame = 2
Query:  236 MLEFMRELRKVVTVGVVGGSDLSKISEQLGK------------------------TVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRY-PDDFNETHFFGDKTYKGGNDHEIFESQRPV 829
            M EF+ E RK V + +VGGSD  KI+EQL                           V+  +DY FSENGL   K  +    QS++  +G  KL+E INF L Y++D+ +P+KRG F+EFR+GM+N+SPIGR+CSQEER +F  +DK H IR K    LREKF    L F+IGGQIS DVFP GWDKT+CL+Y   DF+  HFFGDKT  GGNDHEIF  +R V
Sbjct:    1 MREFLIEARKRVPLAIVGGSDFKKITEQLADHDKDLCMSLLIFFFELQILISSFFPVLSLFDYTFSENGLYGFKGTEPYPVQSIQKAIGDAKLQELINFALRYMSDIQLPVKRGNFVEFRNGMINLSPIGRSCSQEERMQFVEFDKKHGIRQKFTEQLREKFGQYGLQFAIGGQISVDVFPTGWDKTFCLQYLVPDFDTIHFFGDKTAPGGNDHEIFADERTV 223          
BLAST of DY260098 vs. ExPASy Swiss-Prot
Match: PMM_BABBO (Phosphomannomutase OS=Babesia bovis GN=PMM PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.045e-45
Identity = 95/215 (44.19%), Postives = 129/215 (60.00%), Query Frame = 2
Query:  176 LALFDVDGTLTAPRKAATPQMLEFMREL-RKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKF--AHLNLTFSIGGQISFDVFPQGWDKTYCLRYPDDFNETHFFGDKTYKGGNDHEIF 811
            + +FD+DGTLT P +     + + +R   RK   + VV GS   KI  QL    IDE+DYVFSENG   +    L+ +  +   +   KL++ + F L YIADLDIP KRGTFIE R  ++NI P GRNCS  +R  F  YD IH++R K++ VL+ +F      L+F  GGQIS DV+P+ W K+  L +    +  HFFGD T +GGND EI+
Sbjct:    5 MLIFDMDGTLTDPVQVINNDVKDILRRCKRKNFEIAVVSGSKYEKIKGQLNDGFIDEFDYVFSENGTQVYVKNVLVKSLDITEAIPETKLRKMVEFCLRYIADLDIPTKRGTFIEHRKSLINICPPGRNCSMVDRRRFVEYDSIHHVRQKLIQVLKSQFDSDDCPLSFVAGGQISIDVYPKAWSKSIALSHIGKCDVIHFFGDNTREGGNDFEIY 219          
The following BLAST results are available for this feature:
BLAST of DY260098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMM_CAEEL2.932e-5650.22Probable phosphomannomutase OS=Caenorhabditis eleg... [more]
PMM_BABBO1.045e-4544.19Phosphomannomutase OS=Babesia bovis GN=PMM PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260098 ID=DY260098; Name=DY260098; organism=Citrus clementina; type=EST; length=971bp
CAATTACTTCCCCGTAACTTCCCAGCTTCCGCCATTCAAGATTTCAAGAT
CAAGATCTGCTTTAAATTCCGCGTCCAAATTCAAAGCTCTGCCCTCCACT
CCCGCTATTCCTTCCCTTCTATTCCGATAAATCCATACATTTCAAACTCC
AATGGCTGCTAGGAAGCAAGGTTTATTAGCTCTCTTTGATGTTGACGGAA
CTCTCACGGCTCCGAGAAAGGCGGCAACACCACAAATGTTAGAGTTCATG
CGGGAACTGAGAAAGGTTGTTACAGTTGGAGTCGTCGGTGGATCTGATCT
TTCTAAGATATCAGAGCAGCTTGGGAAGACAGTTATTGATGAATACGATT
ATGTGTTTTCTGAGAATGGTCTTGTGGCTCATAAGGATGGGAAATTAATT
GGCACACAGAGCTTGAAATCATTTCTTGGAGGCGAAAAGCTCAAGGAATT
CATAAATTTTACTCTTCATTACATTGCTGACTTGGACATTCCAATTAAAA
GGGGAACTTTCATTGAATTCCGAAGTGGGATGCTTAATATTTCACCAATT
GGGCGAAACTGCAGCCAAGAAGAAAGGGACGAGTTTGAGAGGTATGACAA
GATTCACAATATACGGCCAAAAATGGTATCTGTGCTTCGGGAGAAGTTTG
CTCACCTTAACTTGACATTTTCCATTGGAGGACAGATAAGCTTTGATGTG
TTTCCCCAGGGATGGGACAAGACATACTGCTTGAGATACCCTGATGACTT
CAATGAAACCCACTTTTTTGGGGACAAAACCTACAAGGGAGGGAATGATC
ATGAAATTTTTGAATCCCAGCGACCAGTGGGTCCACACAGTTACCCCCCC
TGAGGATACTATGGAAAAATGTAAGGCTCCCTCCCCGGCTAAACCCTGGA
ATTTGGGAAAAATTATAATAGTCCACCAAACCCCAAAAAAAAATTTCCTA
TTTCTAATGCCAACCAATTCA
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