DY260113

Overview
NameDY260113
Unique NameDY260113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1192
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260113 vs. ExPASy Swiss-Prot
Match: VATC_DROME (V-type proton ATPase subunit C OS=Drosophila melanogaster GN=Vha44 PE=1 SV=5)

HSP 1 Score: 105.531 bits (262), Expect = 6.298e-22
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  336 YLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTNYGGPQVLPAIV*GK*ICPFTCPTILDVLQTIFKIPAREK 767
            YLTRF WD AKYP    LR I D I   + +I+ DLK +   YNN++  L  + +K++GSL  R+L++LVK E  I+ SE+L TLL +VPK    DWL +YE +T+   P+    I      C F   T+   +   FK+ ARE+
Sbjct:  550 YLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGNLQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLTNYEKITDMIVPRSSQLIQEDADYCLFNV-TLFKKVAEEFKLHARER 693          
BLAST of DY260113 vs. ExPASy Swiss-Prot
Match: VATC_YEAST (V-type proton ATPase subunit C OS=Saccharomyces cerevisiae GN=VMA5 PE=1 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 1.854e-19
Identity = 54/177 (30.51%), Postives = 94/177 (53.11%), Query Frame = 3
Query:  150 FNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTNYGGPQVLPA 677
            F IP  ++G+            K ++ + +   KI   ++ L   S     +L ++ +PV  YL  F W   K+     +++++  I    ++++ D++   A YN+ ++ L A  RK++G L+VR L ++VKPED ++ SEHL T+L  VPK  + D+  SYETL+      V+PA
Sbjct:   48 FKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSK----NVVPA 220          

HSP 2 Score: 23.0978 bits (48), Expect = 1.854e-19
Identity = 13/38 (34.21%), Postives = 20/38 (52.63%), Query Frame = 1
Query:  655 VVPRSSQLLYEENEYAPLPVPLFWTCCKQFSKYLPGKK 768
            VVP S+ ++ E+ EY    V LF    ++F+     KK
Sbjct:  217 VVPASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKK 254          
BLAST of DY260113 vs. ExPASy Swiss-Prot
Match: VATC_SCHPO (V-type proton ATPase subunit C OS=Schizosaccharomyces pombe GN=SPAPB2B4.05 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.652e-12
Identity = 51/209 (24.40%), Postives = 103/209 (49.28%), Query Frame = 3
Query:   42 SRYWVVSLPVQN-SAASVWNRLQEQI--SKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSG--IESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTN 650
            S +W++S+P +  S A + + ++  +     S  + +  F++P  +V +            K ++   S   KI   I+     S   ++   +  D  P++ Y++ F W+ +++     + EI D I + +   E+D++ R   +    S    + +KQSG+L+ + L+N+V  ED++  S++L  +   VP   +K +L SYETLT+
Sbjct:    4 SDFWILSVPSRGGSNADLCDDIERLLVSGSTSLISTVAPFDVPPFKVESLDVLISQSEQLTKQDAQCASAISKISDIIKNTVSSSSGDLKDYFMVQDKSPLE-YVSSFAWNSSRFHMNKTISEISDRITSEIISFENDIRTRQTSFQQASSAFQNMQKKQSGNLSQKSLANIVHEEDVVHGSDYLTNVFIAVPLNLEKQFLNSYETLTD 211          
The following BLAST results are available for this feature:
BLAST of DY260113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
VATC_DROME6.298e-2241.38V-type proton ATPase subunit C OS=Drosophila melan... [more]
VATC_YEAST1.854e-1930.51V-type proton ATPase subunit C OS=Saccharomyces ce... [more]
VATC_SCHPO2.652e-1224.40V-type proton ATPase subunit C OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YF18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260113 ID=DY260113; Name=DY260113; organism=Citrus clementina; type=EST; length=1192bp
CTCAGAGCGAACCTTAGAGTGAAAGTGATCGTGAAATGGCATCAAGGTAC
TGGGTGGTGTCTCTTCCAGTACAAAATTCAGCCGCTTCTGTTTGGAATCG
ATTACAGGAACAAATCTCTAAACATTCATTTGACACTCCTCTTTACAGGT
TTAATATCCCCAACCTCCGTGTTGGAACCCTAGATTCACTCCTTGCACTT
AGCGATGATCTCGTGAAGTCAAATAGCTTTGTTGAATCAGTATCTCACAA
GATCAGGCGACAGATTGAGGAACTGGAGAGGGTATCAGGCATAGAGAGTA
GTTCTTTGAGTGTTGATGGAGTACCAGTTGATACTTATCTCACTAGGTTT
GTTTGGGATGAAGCAAAGTACCCAACTATGTCACCTTTAAGGGAAATTGT
GGATGGCATTCATACTCTTGTGGCAAAGATTGAAGACGATCTTAAGGTTC
GTGTTGCTGAGTATAATAATGTCCGCAGTCAGCTGAATGCTATTAATCGA
AAGCAAAGTGGAAGCTTAGCTGTTCGTGATCTTTCCAATCTGGTAAAACC
AGAGGATATCATTACCTCCGAACATCTTGTAACCCTTCTTGCTGTTGTCC
CCAAGTACTCCCAGAAGGATTGGTTGGCTAGCTATGAGACGTTGACTAAC
TATGGTGGTCCCCAGGTCCTCCCAGCTATTGTATGAGGAAAATGAATATG
CCCCTTTACCTGTCCCACTATTTTGGACGTGTTGCAAACAATTTTCAAAA
TACCTGCCCGGGAAAAAGGGCTCCCAAATTCCTGATTTTTAAATATAGTT
CCGAAAGCCCAAAAAAATCTCTAATCCAGGAATTTGGAAAAAATTAATTC
CCCAACCCAAAAAAGCCTTGAAAGCTTCCCTTTTTGCATGGGGTCCTAAA
CCCATTTTCCGGCCAAGGTTTTTAAATTCCCGGGAGGCCTTTTTTTGGTC
CTTACCTTGCTCTTTCCAAAAAAAATTTTTTAAAAAATGGGTTTGCCCCC
CCCCCTTTTCCTGGGACATGGTTTTTTCACCCCCCCCCCCCGGAAGGGGG
AAAAAAAAAAAAAAGGCCTTTTCTATTTTTTTAAAAAAAACTGGGGCGCC
AAAAAGACAAAAAACCACCTTTCTTCGAAAAAAAACACAAAATAAATAAC
ACCCCAAAAAAAATAATCCGCGGCTCTTTTTGGGAAGAGAAG
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