DY260114

Overview
NameDY260114
Unique NameDY260114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length980
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH601_RHOS4 (60 kDa chaperonin 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=groL1 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.603e-12
Identity = 56/163 (34.36%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLC---KACIGHEKLLQWRFTMENLQ-DFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXX-EGVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSVVSKLLEGSKPKPLG 588
            LG A+KI+++KD T I+     KA I   ++ Q R  +E    D+     +E   K +   AVI+V G  + EV+E+KDR             EG+V    ++L+   K LD L   N  Q  G+  ++ ALE  +  IA +AGVDGSVV+  +  S  K  G
Sbjct:  317 LGRAKKISINKDNTTIVDGNGDKAEID-ARVAQIRNQIEETSSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQGGKALDGLTGENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESNEKSFG 478          

HSP 2 Score: 32.7278 bits (73), Expect = 4.603e-12
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            +N +    K   +K PGFG+ RKA L+DIA  T  Q
Sbjct:  264 VNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQ 299          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH604_BRASB (60 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL4 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.603e-12
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILL-------CKACIGHEKLLQWRFTMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSV-VSKLLE 564
            LG A+K+ + K+ T I+         +A +   K      T +  ++  +E   K +   AVI+V G+ + EV+E+KDR            E G++    ++LL A ++L  L+T N  QK GV+ ++ AL      IA +AG DGSV V K+LE
Sbjct:  317 LGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEQLKGLRTKNEDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILE 471          

HSP 2 Score: 33.113 bits (74), Expect = 4.603e-12
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            +N +    K   +K PGFG+ RKA L+DIA  T  Q
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQ 299          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_GEOSM (60 kDa chaperonin OS=Geobacter sp. (strain M21) GN=groL PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.603e-12
Identity = 55/160 (34.38%), Postives = 75/160 (46.88%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFPEESCTKHSYL----AAVIKVCGSNKAEVREKKDRXXXXXXXXXXXX-EGVVSVMSLLY--ACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSVVSKLLEGSK 573
            LG A+KITV KD T I+      G E  +Q R  M      E   D+  E   +         AVIKV  + + E++EKK R             EG+V    + Y  A K L+ LQ A   Q+ GV  I+ ALE  +  I+ +AGVDGS+V   ++  K
Sbjct:  317 LGQAKKITVDKDNTTII---DGFGAEADIQGRVKMIRAQIDETSSDYDREKLQERLAKLVGGVAVIKVGAATEIEMKEKKARVEDALHATRAAVDEGIVPGGGVAYLRAMKVLENLQLAPE-QQFGVNVIKRALEEPIRQISQNAGVDGSIVVDKVKNGK 472          

HSP 2 Score: 35.039 bits (79), Expect = 4.603e-12
Identity = 18/33 (54.55%), Postives = 20/33 (60.61%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            L GVL     C +K PGFG+ RKA L DIA  T
Sbjct:  267 LRGVLNV---CAVKAPGFGDRRKAMLEDIAILT 296          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.603e-12
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            LG A+K+ + K+ T I+      G +K ++ R T       E   D+     +E   K +   AVI+V G+ + EV+E+KDR             EG++    ++LL A K LD ++  N  QK GV  ++ A+++    I  +AG DGS VV KLLE
Sbjct:  317 LGRAKKVVIDKENTTIV---DGAGRKKDIEARVTQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRALKALDAVKPDNPDQKAGVDIVRRAIQVPARQIIQNAGEDGSLVVGKLLE 471          

HSP 2 Score: 32.3426 bits (72), Expect = 4.603e-12
Identity = 15/33 (45.45%), Postives = 19/33 (57.58%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA L DIA  T
Sbjct:  264 VNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILT 296          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH601_ERYLH (60 kDa chaperonin 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL1 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.604e-12
Identity = 54/157 (34.39%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLC---KACIGHEKLLQWRFTMENL-----QDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLEG 567
            LG A+K+ + KD T I+     KA I   ++ Q R  +E       ++  +E   K +   AVI+V G+ + EV+E+KDR             EG++    ++LL A K LD L+ AN  Q+ G+  ++ AL      IA +AG DG+ +V KLLEG
Sbjct:  317 LGRAKKVIIDKDNTTIVDGAGNKADID-ARVSQIRAQIETTTSDYDREKLQERVAKLAGGVAVIRVGGATEVEVKERKDRVDDALHATRAAVEEGILPGGGIALLRALKSLDGLKAANDDQQSGIDIVRRALRAPARQIAENAGEDGAYIVGKLLEG 472          

HSP 2 Score: 32.3426 bits (72), Expect = 4.604e-12
Identity = 14/34 (41.18%), Postives = 20/34 (58.82%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS 103
            +N +    K   +K PGFG+ RKA L D+A  T+
Sbjct:  264 VNKLRGGLKVAAVKAPGFGDRRKAMLEDVAILTA 297          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 5.049e-12
Identity = 45/152 (29.61%), Postives = 75/152 (49.34%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSVV 549
            LG A+K+ + K+ T I+      G +  +Q R         E   D+     +E   K +   AVI+V G+ + EV+E+KDR            E G++    ++LL A K LD +   N  QK+G+  ++ A+E  +  IA +AG +GS++
Sbjct:  317 LGRAKKVVIEKENTTIV---DGAGSKDEIQGRVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGLLPGGGVALLRAAKALDNVTGENEDQKVGISIVRRAIEAPIRQIAENAGAEGSII 465          

HSP 2 Score: 32.7278 bits (73), Expect = 5.049e-12
Identity = 15/33 (45.45%), Postives = 20/33 (60.61%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA L+DIA  T
Sbjct:  264 VNKLRGGLKVAAVKAPGFGDRRKAMLQDIAILT 296          

HSP 3 Score: 21.1718 bits (43), Expect = 5.049e-12
Identity = 8/23 (34.78%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  605 DMLMPEIVFPLKTIRAVLVEATS 673
            D+    ++ P+K +RA L +A S
Sbjct:  488 DLYQMGVIDPVKVVRAALQDAAS 510          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60C_DROME (60 kDa heat shock protein homolog 2, mitochondrial OS=Drosophila melanogaster GN=Hsp60C PE=2 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 5.967e-12
Identity = 55/180 (30.56%), Postives = 90/180 (50.00%), Query Frame = 1
Query:  112 KDFECVSLGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTMENLQDFPEESCTKH------------SYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSVV---SKLLEGSKPKPLGKGE 597
            +D +    G   ++ VSKD T++L  K   G +  ++ R  +E L++  +ES + +            S   A+++V GS+  EV EKKDR            E G+V     +LL   ++L+ L+ AN  Q +G++ I+ AL M    IA +AGVDG++V    ++L+G       KGE
Sbjct:  335 EDIKMSDFGRVGEVVVSKDDTMLLKGK---GQKAEVEKR--VEGLREAIKESTSSYEKEKMQERLARLSSGVALLRVGGSSDVEVSEKKDRVIDALNATRAAVEEGIVPGGGTALLRCIQKLNDLKGANEDQNMGIEIIRRALRMPCLTIAKNAGVDGAMVVAKVEILDGDYGYDALKGE 509          

HSP 2 Score: 32.7278 bits (73), Expect = 5.967e-12
Identity = 13/33 (39.39%), Postives = 21/33 (63.64%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    + C +K PGFG++RK +L D+A  T
Sbjct:  288 VNRLKVGLQVCAVKAPGFGDNRKENLMDMAVAT 320          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_CHICK (60 kDa heat shock protein, mitochondrial OS=Gallus gallus GN=HSPD1 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.968e-12
Identity = 54/167 (32.34%), Postives = 82/167 (49.10%), Query Frame = 1
Query:  112 KDFECVSLGHAEKITVSKDQTVILLCKACIGHEKLLQWRF----------TMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLEGS 570
            +D +    G   ++ V+KD T++L  K   G +  ++ R           T E  ++   E   K S   AV+KV G++  EV EKKDR            E G+V     +LL     LD L+ AN  QKIG++ I+  L++    IA +AGV+GS +V K+L+ S
Sbjct:  335 EDIQPHDFGKVGEVIVTKDDTMLLKGK---GEKAQIEKRIQEIIEQLEVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVPGGGCALLRCIPALDALKPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKILQSS 498          

HSP 2 Score: 30.0314 bits (66), Expect = 5.968e-12
Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIA 91
            LN +    +   +K PGFG++RK  L+D+A
Sbjct:  288 LNRLKVGLQVVAVKAPGFGDNRKNQLKDMA 317          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_RICCN (60 kDa chaperonin OS=Rickettsia conorii GN=groL PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.975e-12
Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  130 SLGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVVS--VMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            SLG A+++T+SK+ TVI+      G +K ++ R         E   D+     +E   K S   AV+KV G+ + EV+E+KDR             EGVV+   ++LL+A + L KL+  N  Q+ G++ +  AL+  +  I  +AG +G  VV KLLE
Sbjct:  316 SLGTAKRVTISKENTVIVDGN---GDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLE 471          

HSP 2 Score: 31.5722 bits (70), Expect = 5.975e-12
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA + DIA  T
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILT 296          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_RICAH (60 kDa chaperonin OS=Rickettsia akari (strain Hartford) GN=groL PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.975e-12
Identity = 55/159 (34.59%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  130 SLGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVVS--VMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            SLG A+++TVSK+ TVI+      G +K ++ R         E   D+     +E   K S   AV+KV G+ + EV+E+KDR             EGVV+   ++LL+A + L KL+  N  Q+ G++ +  AL+  +  I  +AG +G  VV KLLE
Sbjct:  316 SLGTAKRVTVSKENTVIV---DGSGDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQTLTKLKVENKDQQAGIEIVIEALKDPLKQIIENAGENGGVVVGKLLE 471          

HSP 2 Score: 31.5722 bits (70), Expect = 5.975e-12
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA + DIA  T
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILT 296          
The following BLAST results are available for this feature:
BLAST of DY260114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
CH601_RHOS44.603e-1234.3660 kDa chaperonin 1 OS=Rhodobacter sphaeroides (st... [more]
CH604_BRASB4.603e-1232.2660 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain ... [more]
CH60_GEOSM4.603e-1234.3860 kDa chaperonin OS=Geobacter sp. (strain M21) GN... [more]
CH601_NITWN4.603e-1232.9160 kDa chaperonin 1 OS=Nitrobacter winogradskyi (s... [more]
CH601_ERYLH4.604e-1234.3960 kDa chaperonin 1 OS=Erythrobacter litoralis (st... [more]
CH602_MESSB5.049e-1229.6160 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B... [more]
CH60C_DROME5.967e-1230.5660 kDa heat shock protein homolog 2, mitochondrial... [more]
CH60_CHICK5.968e-1232.3460 kDa heat shock protein, mitochondrial OS=Gallus... [more]
CH60_RICCN5.975e-1233.9660 kDa chaperonin OS=Rickettsia conorii GN=groL PE... [more]
CH60_RICAH5.975e-1234.5960 kDa chaperonin OS=Rickettsia akari (strain Hart... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YF19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260114 ID=DY260114; Name=DY260114; organism=Citrus clementina; type=EST; length=980bp
CTTAAATGGAGTGCTTACAGCAACCAAGGCTTGTGTCATAAAACCTCCTG
GATTTGGAGAAAGTAGGAAGGCTAGCCTTCGGGACATTGCCAAATTCACG
TCATGACAGGAAAAGATTTTGAATGCGTATCTCTTGGCCATGCTGAGAAG
ATTACGGTATCAAAGGATCAGACGGTTATCCTTCTTTGTAAGGCTTGCAT
AGGACACGAAAAGTTGTTACAGTGGAGATTCACAATGGAAAATTTACAAG
ATTTCCCTGAAGAGAGCTGTACAAAGCACTCTTATCTCGCTGCTGTTATA
AAGGTCTGTGGAAGTAATAAAGCTGAAGTGCGTGAAAAGAAGGATAGAGT
TGCTAATGCCATAAATGCTGTCAAGGCTGCAAAGGAAGGAGTTGTTAGTG
TGATGTCACTTTTATATGCCTGCAAGGAGTTGGATAAATTGCAAACTGCT
AACCATGGTCAGAAGATTGGTGTTCAAGCTATCCAATATGCTCTTGAGAT
GCTGGTGAGCGCGATTGCTTATAGCGCTGGAGTTGATGGGTCAGTTGTTA
GCAAGCTACTCGAGGGATCCAAGCCTAAACCCCTCGGTAAAGGTGAAAAA
TGCAGATATGCTTATGCCAGAAATTGTTTTTCCATTGAAAACCATAAGAG
CAGTCTTGGTGGAGGCTACAAGTGAGATGTTACCAAGACTTTGAAATTGA
GGCTCTTAAGGTGGCTCAGCTTGTCCTTCCAAGAATATTTGCAAAGAAAG
TTCCCGCTGATACAAACCCCCCAAGTAAAACAAAGGCGTAATGGAAGCTT
CCATCACCTTTCCCTGGGTGCCGTTATGGGTACCGGGATTTAAAACCCAA
ATTCCTCAGGGCACATTATATTTTATTTTTATTTTGGTTGAAAAAACAAT
ACATTAAACCTTTTTCCTAAACCATAACCCCAAAACAAAAAAACCGGAAT
AAATTGGGCCCCCCCGAAATTTCGCCCCCT
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