DY260114 | Citrus Genome Database

Overview


Name	DY260114
Unique Name	DY260114
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	980

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_RICRS (60 kDa chaperonin OS=Rickettsia rickettsii (strain Sheila Smith) GN=groL PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.976e-12
Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 1

Query:  130 SLGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVVS--VMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            SLG A+++T+SK+ TVI+      G +K ++ R         E   D+     +E   K S   AV+KV G+ + EV+E+KDR             EGVV+   ++LL+A + L KL+  N  Q+ G++ +  AL+  +  I  +AG +G  VV KLLE
Sbjct:  316 SLGTAKRVTISKENTVIVDGN---GDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLE 471

HSP 2 Score: 31.5722 bits (70), Expect = 5.976e-12
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2

Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA + DIA  T
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILT 296

BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_RICRO (60 kDa chaperonin OS=Rickettsia rickettsii (strain Iowa) GN=groL PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.976e-12
Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 1

Query:  130 SLGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVVS--VMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            SLG A+++T+SK+ TVI+      G +K ++ R         E   D+     +E   K S   AV+KV G+ + EV+E+KDR             EGVV+   ++LL+A + L KL+  N  Q+ G++ +  AL+  +  I  +AG +G  VV KLLE
Sbjct:  316 SLGTAKRVTISKENTVIVDGN---GDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLE 471

HSP 2 Score: 31.5722 bits (70), Expect = 5.976e-12
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2

Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA + DIA  T
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILT 296

BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_RICPU (60 kDa chaperonin OS=Rickettsia peacockii (strain Rustic) GN=groL PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.976e-12
Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 1

Query:  130 SLGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVVS--VMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            SLG A+++T+SK+ TVI+      G +K ++ R         E   D+     +E   K S   AV+KV G+ + EV+E+KDR             EGVV+   ++LL+A + L KL+  N  Q+ G++ +  AL+  +  I  +AG +G  VV KLLE
Sbjct:  316 SLGTAKRVTISKENTVIVDGN---GDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLE 471

HSP 2 Score: 31.5722 bits (70), Expect = 5.976e-12
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2

Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA + DIA  T
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILT 296

BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_RICM5 (60 kDa chaperonin OS=Rickettsia massiliae (strain Mtu5) GN=groL PE=3 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 5.976e-12
Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 1

Query:  130 SLGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVVS--VMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            SLG A+++T+SK+ TVI+      G +K ++ R         E   D+     +E   K S   AV+KV G+ + EV+E+KDR             EGVV+   ++LL+A + L KL+  N  Q+ G++ +  AL+  +  I  +AG +G  VV KLLE
Sbjct:  316 SLGTAKRVTISKENTVIVDGN---GDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLE 471

HSP 2 Score: 31.5722 bits (70), Expect = 5.976e-12
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2

Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA + DIA  T
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILT 296

BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_RICAE (60 kDa chaperonin OS=Rickettsia africae (strain ESF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.976e-12
Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 1

Query:  130 SLGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVVS--VMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            SLG A+++T+SK+ TVI+      G +K ++ R         E   D+     +E   K S   AV+KV G+ + EV+E+KDR             EGVV+   ++LL+A + L KL+  N  Q+ G++ +  AL+  +  I  +AG +G  VV KLLE
Sbjct:  316 SLGTAKRVTISKENTVIVDGN---GDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQPLTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLE 471

HSP 2 Score: 31.5722 bits (70), Expect = 5.976e-12
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2

Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA + DIA  T
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILT 296

BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_SILST (60 kDa chaperonin OS=Silicibacter sp. (strain TM1040) GN=groL PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 5.976e-12
Identity = 52/165 (31.52%), Postives = 81/165 (49.09%), Query Frame = 1

Query:  133 LGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXX-EGVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSVVSKLLEGSKPKPLG 588
            LG A+KI ++KD+T I+      G +  ++ R         E   D+     +E   K +   AVI+V G  + EV+E+KDR             EGV+    ++L+ A K L+ L   N  Q  G+  ++ ALE  +  IA +AGVDG+VV+  +  S+ K  G
Sbjct:  317 LGTAKKIQITKDETTIV---DGAGEKAEIEARVAQIRAQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGVIVGGGVALVQAGKSLEGLTGVNADQNAGIAIVRRALEAPLRQIAENAGVDGAVVAGKIRESEDKNFG 478

HSP 2 Score: 32.7278 bits (73), Expect = 5.976e-12
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 2

Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            +N +    K   +K PGFG+ RKA L+DIA  T  Q
Sbjct:  264 VNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQ 299

BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH603_BRAJA (60 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN=groL3 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 5.976e-12
Identity = 50/158 (31.65%), Postives = 80/158 (50.63%), Query Frame = 1

Query:  133 LGHAEKITVSKDQTVILL-------CKACIGHEKLLQWRFTMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLEGSK 573
            LG A+K+ + K+ T I+         +A +   K      T +  ++  +E   K +   AVI+V G+ + EV+E+KDR            E G+V    ++LL A ++L  L+T N  QK GV+ ++ AL      IA +AG DGS VV K+L+  +
Sbjct:  317 LGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGLRTENDDQKTGVEIVRKALSWPARQIAINAGEDGSIVVGKVLDNEQ 474

HSP 2 Score: 33.113 bits (74), Expect = 5.976e-12
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 2

Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            +N +    K   +K PGFG+ RKA L+DIA  T  Q
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQ 299

BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.979e-12
Identity = 51/167 (30.54%), Postives = 78/167 (46.71%), Query Frame = 1

Query:  112 KDFECVSLGHAEKITVSKDQTVIL-------LCKACIGHEKLLQWRFTMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHG-QKIGVQAIQYALEMLVSAIAYSAGVDGSV-VSKLLEGSKP 576
            +D     LG A+ + V KD+T+I+         K  I   K      T E  ++  +E   K +   AVIKV  + + E++EKK R            E G+V    ++LL A K ++K+     G +KIG Q +  AL   +  IA +AG DG+V + K+L    P
Sbjct:  308 EDLTLEDLGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDP 474

HSP 2 Score: 37.7354 bits (86), Expect = 5.979e-12
Identity = 18/36 (50.00%), Postives = 23/36 (63.89%), Query Frame = 2

Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            LN +    ++C +K PGFGE RKA L+DIA  T  Q
Sbjct:  262 LNKLKGTLQSCAVKAPGFGERRKAMLQDIAILTGGQ 297

BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.979e-12
Identity = 51/167 (30.54%), Postives = 78/167 (46.71%), Query Frame = 1

Query:  112 KDFECVSLGHAEKITVSKDQTVIL-------LCKACIGHEKLLQWRFTMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHG-QKIGVQAIQYALEMLVSAIAYSAGVDGSV-VSKLLEGSKP 576
            +D     LG A+ + V KD+T+I+         K  I   K      T E  ++  +E   K +   AVIKV  + + E++EKK R            E G+V    ++LL A K ++K+     G +KIG Q +  AL   +  IA +AG DG+V + K+L    P
Sbjct:  308 EDLTLEDLGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDP 474

HSP 2 Score: 37.7354 bits (86), Expect = 5.979e-12
Identity = 18/36 (50.00%), Postives = 23/36 (63.89%), Query Frame = 2

Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            LN +    ++C +K PGFGE RKA L+DIA  T  Q
Sbjct:  262 LNKLKGTLQSCAVKAPGFGERRKAMLQDIAILTGGQ 297

BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.979e-12
Identity = 51/167 (30.54%), Postives = 78/167 (46.71%), Query Frame = 1

Query:  112 KDFECVSLGHAEKITVSKDQTVIL-------LCKACIGHEKLLQWRFTMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHG-QKIGVQAIQYALEMLVSAIAYSAGVDGSV-VSKLLEGSKP 576
            +D     LG A+ + V KD+T+I+         K  I   K      T E  ++  +E   K +   AVIKV  + + E++EKK R            E G+V    ++LL A K ++K+     G +KIG Q +  AL   +  IA +AG DG+V + K+L    P
Sbjct:  308 EDLTLEDLGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDP 474

HSP 2 Score: 37.7354 bits (86), Expect = 5.979e-12
Identity = 18/36 (50.00%), Postives = 23/36 (63.89%), Query Frame = 2

Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            LN +    ++C +K PGFGE RKA L+DIA  T  Q
Sbjct:  262 LNKLKGTLQSCAVKAPGFGERRKAMLQDIAILTGGQ 297

The following BLAST results are available for this feature:

BLAST of DY260114 vs. ExPASy Swiss-Prot

BLAST of DY260114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130


Match Name	E-value	Identity	Description
CH60_RICRS	5.976e-12	33.96	60 kDa chaperonin OS=Rickettsia rickettsii (strain...	[more]
CH60_RICRO	5.976e-12	33.96	60 kDa chaperonin OS=Rickettsia rickettsii (strain...	[more]
CH60_RICPU	5.976e-12	33.96	60 kDa chaperonin OS=Rickettsia peacockii (strain ...	[more]
CH60_RICM5	5.976e-12	33.96	60 kDa chaperonin OS=Rickettsia massiliae (strain ...	[more]
CH60_RICAE	5.976e-12	33.96	60 kDa chaperonin OS=Rickettsia africae (strain ES...	[more]
CH60_SILST	5.976e-12	31.52	60 kDa chaperonin OS=Silicibacter sp. (strain TM10...	[more]
CH603_BRAJA	5.976e-12	31.65	60 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN...	[more]
CH60_THESQ	5.979e-12	30.54	60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G...	[more]
CH60_THEP1	5.979e-12	30.54	60 kDa chaperonin OS=Thermotoga petrophila (strain...	[more]
CH60_THEMA	5.979e-12	30.54	60 kDa chaperonin OS=Thermotoga maritima GN=groL P...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAP11YF19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY260114 ID=DY260114; Name=DY260114; organism=Citrus clementina; type=EST; length=980bp
CTTAAATGGAGTGCTTACAGCAACCAAGGCTTGTGTCATAAAACCTCCTG
GATTTGGAGAAAGTAGGAAGGCTAGCCTTCGGGACATTGCCAAATTCACG
TCATGACAGGAAAAGATTTTGAATGCGTATCTCTTGGCCATGCTGAGAAG
ATTACGGTATCAAAGGATCAGACGGTTATCCTTCTTTGTAAGGCTTGCAT
AGGACACGAAAAGTTGTTACAGTGGAGATTCACAATGGAAAATTTACAAG
ATTTCCCTGAAGAGAGCTGTACAAAGCACTCTTATCTCGCTGCTGTTATA
AAGGTCTGTGGAAGTAATAAAGCTGAAGTGCGTGAAAAGAAGGATAGAGT
TGCTAATGCCATAAATGCTGTCAAGGCTGCAAAGGAAGGAGTTGTTAGTG
TGATGTCACTTTTATATGCCTGCAAGGAGTTGGATAAATTGCAAACTGCT
AACCATGGTCAGAAGATTGGTGTTCAAGCTATCCAATATGCTCTTGAGAT
GCTGGTGAGCGCGATTGCTTATAGCGCTGGAGTTGATGGGTCAGTTGTTA
GCAAGCTACTCGAGGGATCCAAGCCTAAACCCCTCGGTAAAGGTGAAAAA
TGCAGATATGCTTATGCCAGAAATTGTTTTTCCATTGAAAACCATAAGAG
CAGTCTTGGTGGAGGCTACAAGTGAGATGTTACCAAGACTTTGAAATTGA
GGCTCTTAAGGTGGCTCAGCTTGTCCTTCCAAGAATATTTGCAAAGAAAG
TTCCCGCTGATACAAACCCCCCAAGTAAAACAAAGGCGTAATGGAAGCTT
CCATCACCTTTCCCTGGGTGCCGTTATGGGTACCGGGATTTAAAACCCAA
ATTCCTCAGGGCACATTATATTTTATTTTTATTTTGGTTGAAAAAACAAT
ACATTAAACCTTTTTCCTAAACCATAACCCCAAAACAAAAAAACCGGAAT
AAATTGGGCCCCCCCGAAATTTCGCCCCCT