DY260114

Overview
NameDY260114
Unique NameDY260114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length980
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_RICPR (60 kDa chaperonin OS=Rickettsia prowazekii GN=groL PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.307e-11
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  130 SLGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVVS--VMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            +LG A+++T+SK+ TVI+      G +K ++ R         E   D+     +E   K S   AV+KV G+ + EV+E+KDR             EGVV+   ++LL+A + L KL+  N  Q+ G++ +  AL+  +  I  +AG +G  VV KLLE
Sbjct:  316 NLGTAKRVTISKENTVIVDGN---GDKKNIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQTLTKLKVENKDQQAGIEIVIEALKDPLKQIVKNAGENGGVVVGKLLE 471          

HSP 2 Score: 31.5722 bits (70), Expect = 1.307e-11
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA + DIA  T
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILT 296          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 1.307e-11
Identity = 49/155 (31.61%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILL-------CKACIGHEKLLQWRFTMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSV-VSKLLE 564
            LG A+K+ + K+ T I+         +A +   K      T +  ++  +E   K +   AVI+V G+ + EV+E+KDR            E G++    ++LL A + L  ++T N  QK GV+ ++ AL      IA +AG DGSV V K+LE
Sbjct:  317 LGRAKKVMIDKENTTIVSGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEHLKGIRTKNDDQKTGVEIVRKALSYPARQIAINAGEDGSVIVGKILE 471          

HSP 2 Score: 33.113 bits (74), Expect = 1.307e-11
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            +N +    K   +K PGFG+ RKA L+DIA  T  Q
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQ 299          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_JANSC (60 kDa chaperonin OS=Jannaschia sp. (strain CCS1) GN=groL PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.308e-11
Identity = 51/165 (30.91%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXX-EGVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSVVSKLLEGSKPKPLG 588
            LG A+++T+SKD+T I+      G++  ++ R         E+  D+     +E   K +   AVIKV G ++ EV+E+KDR             EG+V    ++L+   K L  L+  N  Q  G+  ++ ALE  +  IA ++GVDGSVV+  +  S     G
Sbjct:  316 LGTAKRLTISKDETTIV---DGAGNKPEIEARVAQIRQQIEESTSDYDREKLQERVAKLAGGVAVIKVGGMSEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGGKSLAGLEGENADQNAGIAIVRRALEAPLRQIAENSGVDGSVVAGKIRESDDNAFG 477          

HSP 2 Score: 32.7278 bits (73), Expect = 1.308e-11
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            +N +    K   +K PGFG+ RKA L+DIA  T  Q
Sbjct:  263 VNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQ 298          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH607_BRAJA (60 kDa chaperonin 7 OS=Bradyrhizobium japonicum GN=groL7 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.698e-11
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILL-------CKACIGHEKLLQWRFTMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXX-EGVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            LG A+K+ + K+ T I+         +A +G  K      T +  ++  +E   K +   AVI+V G+ + EV+EKKDR             EG+V    ++LL A K + +L  AN   + G+  +  ALE  +  I+ +AGV+GS VV K+LE
Sbjct:  317 LGRAKKVVIDKENTTIVNGAGKKPDIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRLTNANDDVQAGINIVLKALEAPIRQISENAGVEGSIVVGKILE 471          

HSP 2 Score: 31.9574 bits (71), Expect = 1.698e-11
Identity = 15/36 (41.67%), Postives = 20/36 (55.56%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            +N +    K   +K PGFG+ RKA L D+A  T  Q
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMLEDLAILTGGQ 299          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_ACIAD (60 kDa chaperonin OS=Acinetobacter sp. (strain ADP1) GN=groL PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.698e-11
Identity = 50/149 (33.56%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVIL--LCKACIGHEKLLQWRFTMENL-----QDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVVSV--MSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSVV 549
            LG A KITVSK+ TVI+     A    E++ Q R  +E       ++  +E   K +   AVIK+  + + E++EKKDR            E GVV+   ++L+ A   LD L  AN  Q +G+  ++ A+E  +  I  +AG + SVV
Sbjct:  317 LGTAHKITVSKENTVIVDGAGDANAIAERVQQIRAQIEESTSEYDKEKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGVVAGGGVALVRAVNSLDGLTGANDDQTVGINILRRAIEAPLRQIVSNAGDEPSVV 465          

HSP 2 Score: 36.5798 bits (83), Expect = 1.698e-11
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K C +K PGFG+ RKA L+DIA  T
Sbjct:  264 VNNMRGIIKVCAVKAPGFGDRRKAMLQDIAILT 296          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_RICCK (60 kDa chaperonin OS=Rickettsia canadensis (strain McKiel) GN=groL PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.203e-11
Identity = 53/159 (33.33%), Postives = 83/159 (52.20%), Query Frame = 1
Query:  130 SLGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVVS--VMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            SLG A+++T+SK+ TVI+      G +K ++ R         E   D+     +E   K S   AV+KV G+ + EV+E+KDR             EGVV+   ++LL+  + L KL+  N  Q+ G++ +  AL+  +  I  +AG +G  VV KLLE
Sbjct:  316 SLGTAKRVTISKENTVIV---DGSGDKKSIEDRVLQIKSQIAETTSDYDKEKLQERLAKLSGGVAVLKVGGATEVEVKERKDRVEDALAATRAAVEEGVVAGGGVTLLHTSQILTKLKVENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLE 471          

HSP 2 Score: 31.5722 bits (70), Expect = 2.203e-11
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA + DIA  T
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMMEDIAILT 296          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH601_BRASB (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.203e-11
Identity = 50/155 (32.26%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILL-------CKACIGHEKLLQWRFTMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXX-EGVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLE 564
            LG A+K+ + K+ T I+         +A +G  K      T +  ++  +E   K +   AVI+V G+ + EV+EKKDR             EG+V    ++LL A K + ++   N   + G+  +  ALE  V  IA +AGV+GS VV K+LE
Sbjct:  317 LGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRITNPNSDVQAGINIVLKALEAPVRQIAENAGVEGSLVVGKILE 471          

HSP 2 Score: 32.7278 bits (73), Expect = 2.203e-11
Identity = 16/36 (44.44%), Postives = 20/36 (55.56%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            +N +    K   +K PGFG+ RKA L DIA  T  Q
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQ 299          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH602_SPHAL (60 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=groL2 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.204e-11
Identity = 51/157 (32.48%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILL-------CKACIGHEKLLQWRFTMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDR-XXXXXXXXXXXXEGVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLEGS 570
            LG A+K+ + KD T I+          A I   +      T +  ++  +E   K +   AVI+V G+ + EV+E+KDR             EG++    ++LL A K LD L+ AN  Q+ G+  ++ AL      IA +AG DG+ +V KLLE S
Sbjct:  317 LGRAKKVVIDKDNTTIVDGVGARTDIDARIAQIRQQIDTTTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDALHATRAAVEEGILPGGGIALLRALKALDGLKAANDDQQSGIDIVRRALRAPARQIADNAGEDGAWIVGKLLESS 473          

HSP 2 Score: 32.3426 bits (72), Expect = 2.204e-11
Identity = 15/33 (45.45%), Postives = 19/33 (57.58%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFT 100
            +N +    K   +K PGFG+ RKA L DIA  T
Sbjct:  264 VNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILT 296          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_HUMAN (60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 2.856e-11
Identity = 54/164 (32.93%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  112 KDFECVSLGHAEKITVSKDQTVILLCKACIGH-EKLLQWRF------TMENLQDFPEESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXXE-GVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGS-VVSKLLEGS 570
            +D +   LG   ++ V+KD  ++L  K      EK +Q         T E  ++   E   K S   AV+KV G++  EV EKKDR            E G+V     +LL     LD L  AN  QKIG++ I+  L++    IA +AGV+GS +V K+++ S
Sbjct:  335 EDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQSS 498          

HSP 2 Score: 30.0314 bits (66), Expect = 2.856e-11
Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIA 91
            LN +    +   +K PGFG++RK  L+D+A
Sbjct:  288 LNRLKVGLQVVAVKAPGFGDNRKNQLKDMA 317          
BLAST of DY260114 vs. ExPASy Swiss-Prot
Match: CH60_SILPO (60 kDa chaperonin OS=Silicibacter pomeroyi GN=groL PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.860e-11
Identity = 50/153 (32.68%), Postives = 78/153 (50.98%), Query Frame = 1
Query:  133 LGHAEKITVSKDQTVILLCKACIGHEKLLQWRFTM------ENLQDFP----EESCTKHSYLAAVIKVCGSNKAEVREKKDRXXXXXXXXXXXX-EGVV--SVMSLLYACKELDKLQTANHGQKIGVQAIQYALEMLVSAIAYSAGVDGSVVS 552
            LG A+KI+++KD+T I+      G +  ++ R         E   D+     +E   K +   AVI+V G  + EV+E+KDR             EGVV    ++L+ A K L  L+ AN  Q  G+  ++ A+E  +  IA +AGVDG+VV+
Sbjct:  317 LGTAKKISITKDETTIV---DGAGEKAEIEARVAQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGVVVGGGVALVQAGKVLADLEGANADQTAGINIVRKAIEAPLRQIAENAGVDGAVVA 466          

HSP 2 Score: 32.7278 bits (73), Expect = 2.860e-11
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 2
Query:    2 LNGVLTATKACVIKPPGFGESRKASLRDIAKFTS*Q 109
            +N +    K   +K PGFG+ RKA L+DIA  T  Q
Sbjct:  264 VNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQ 299          
The following BLAST results are available for this feature:
BLAST of DY260114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
CH60_RICPR1.307e-1133.3360 kDa chaperonin OS=Rickettsia prowazekii GN=groL... [more]
CH602_BRAJA1.307e-1131.6160 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH60_JANSC1.308e-1130.9160 kDa chaperonin OS=Jannaschia sp. (strain CCS1) ... [more]
CH607_BRAJA1.698e-1132.2660 kDa chaperonin 7 OS=Bradyrhizobium japonicum GN... [more]
CH60_ACIAD1.698e-1133.5660 kDa chaperonin OS=Acinetobacter sp. (strain ADP... [more]
CH60_RICCK2.203e-1133.3360 kDa chaperonin OS=Rickettsia canadensis (strain... [more]
CH601_BRASB2.203e-1132.2660 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH602_SPHAL2.204e-1132.4860 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=... [more]
CH60_HUMAN2.856e-1132.9360 kDa heat shock protein, mitochondrial OS=Homo s... [more]
CH60_SILPO2.860e-1132.6860 kDa chaperonin OS=Silicibacter pomeroyi GN=groL... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YF19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260114 ID=DY260114; Name=DY260114; organism=Citrus clementina; type=EST; length=980bp
CTTAAATGGAGTGCTTACAGCAACCAAGGCTTGTGTCATAAAACCTCCTG
GATTTGGAGAAAGTAGGAAGGCTAGCCTTCGGGACATTGCCAAATTCACG
TCATGACAGGAAAAGATTTTGAATGCGTATCTCTTGGCCATGCTGAGAAG
ATTACGGTATCAAAGGATCAGACGGTTATCCTTCTTTGTAAGGCTTGCAT
AGGACACGAAAAGTTGTTACAGTGGAGATTCACAATGGAAAATTTACAAG
ATTTCCCTGAAGAGAGCTGTACAAAGCACTCTTATCTCGCTGCTGTTATA
AAGGTCTGTGGAAGTAATAAAGCTGAAGTGCGTGAAAAGAAGGATAGAGT
TGCTAATGCCATAAATGCTGTCAAGGCTGCAAAGGAAGGAGTTGTTAGTG
TGATGTCACTTTTATATGCCTGCAAGGAGTTGGATAAATTGCAAACTGCT
AACCATGGTCAGAAGATTGGTGTTCAAGCTATCCAATATGCTCTTGAGAT
GCTGGTGAGCGCGATTGCTTATAGCGCTGGAGTTGATGGGTCAGTTGTTA
GCAAGCTACTCGAGGGATCCAAGCCTAAACCCCTCGGTAAAGGTGAAAAA
TGCAGATATGCTTATGCCAGAAATTGTTTTTCCATTGAAAACCATAAGAG
CAGTCTTGGTGGAGGCTACAAGTGAGATGTTACCAAGACTTTGAAATTGA
GGCTCTTAAGGTGGCTCAGCTTGTCCTTCCAAGAATATTTGCAAAGAAAG
TTCCCGCTGATACAAACCCCCCAAGTAAAACAAAGGCGTAATGGAAGCTT
CCATCACCTTTCCCTGGGTGCCGTTATGGGTACCGGGATTTAAAACCCAA
ATTCCTCAGGGCACATTATATTTTATTTTTATTTTGGTTGAAAAAACAAT
ACATTAAACCTTTTTCCTAAACCATAACCCCAAAACAAAAAAACCGGAAT
AAATTGGGCCCCCCCGAAATTTCGCCCCCT
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