DY260115

Overview
NameDY260115
Unique NameDY260115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1102
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260115_ssr216 microsatellite DY260115_ssr216:216..227. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1419 contig Ccv1_Contig1419:1..1102. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 1.058e-52
Identity = 98/189 (51.85%), Postives = 128/189 (67.72%), Query Frame = 3
Query:  162 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            TF  +F +TW D   + +  G  + L LD+ SG GF +K++YLFG++ M++KLVPG+SAGTVTA+Y+ S  +   DE+DFEFLGN TG PYT+ TN+Y  GKGDREQ+ +LWFDP AD+H Y++LWN HHIVF VDD+P+R +KN       +P  QP              TRGGL K +WSKAPF A
Sbjct:   29 TFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKSKGDTW-DEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTA 216          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 3.079e-52
Identity = 100/188 (53.19%), Postives = 129/188 (68.62%), Query Frame = 3
Query:  165 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            F  ++  TW+  H +Q+ GG  +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY++S T N  DE+DFEFLGNRTGQP  +QTN++  GKG+REQR+ LWFDP+  YH Y++LWN + IVF+VD++PIRV+KN+      FP NQP           D  TRGGL+K  W+ APF A
Sbjct:   34 FGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSS-TNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIA 220          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 4.021e-52
Identity = 97/190 (51.05%), Postives = 130/190 (68.42%), Query Frame = 3
Query:  159 ATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            + F ++F +TW D   +   GG  + L LDQ SG GF SK++YLFGR+ M++KLV G+SAGTVTA+Y++S      DE+DFEFLGN TG+PY + TN++A GKGDREQ+  LWFDP  ++H Y+I+W   HI+F VD++PIRV+ N+ +   PFP +QP           D  TRGGL K +WSKAPF A
Sbjct:   26 SNFFDEFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGAT-HDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNAEKLGVPFPKSQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTA 214          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.170e-51
Identity = 100/188 (53.19%), Postives = 127/188 (67.55%), Query Frame = 3
Query:  165 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            F  ++  TW+  H +Q  GG  +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY++S T N  DE+DFEFLGNRTGQP  +QTN++  GKG+REQR+ LWFDP+  YH Y+ILWN + IVF+VD++PIR +KN+      FP NQP           D  TRGGL+K  W+ APF A
Sbjct:   35 FGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSS-TNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVA 221          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.996e-51
Identity = 96/189 (50.79%), Postives = 131/189 (69.31%), Query Frame = 3
Query:  162 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            +F E+F +TW +   +   GG+ + L LD+ SG GF SK++YLFGR+ M++KLV G+SAGTVTA+Y++S      DE+DFEFLGN TG+PY + TN++A GKG+REQ+  LWFDP  ++H Y+++W   HI+F VD+VPIRV+ N+ +   PFP NQP           D  TRGGL K +WSKAPF A
Sbjct:   26 SFNEEFDLTWGEHRGKIFSGGKMLSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSEGPT-HDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWSKAPFTA 213          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 7.583e-51
Identity = 99/188 (52.66%), Postives = 126/188 (67.02%), Query Frame = 3
Query:  165 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            F +DF VTWS  H+     GR+  L LDQ SG  F+S + +LFG++ MKIKL+ G S GTV A+YM+S+  N RDE+DFEFLGN  GQPY +QTN+YA G  +RE+R++LWFDPA D+H Y+ILWN H IVF VD +PIR+Y+N G     +P  QP          +   TRGG  KI+WSK PF A
Sbjct:   37 FNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQPN-RDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKIDWSKGPFVA 223          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.689e-50
Identity = 96/189 (50.79%), Postives = 127/189 (67.20%), Query Frame = 3
Query:  162 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            +F +DF +TW     +   GG+ + L LD+ SG GF SK++YLFGR+ M++KLV G+SAGTVTA+Y++S      DE+DFEFLGN +G PY + TNI+  GKG+REQ+  LWFDP  ++H Y+I+W   HI+F VD+ PIRV+KN+     PFP NQP           D  TRGGL K +WSKAPF A
Sbjct:   31 SFYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPT-HDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTA 218          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 2.206e-50
Identity = 95/188 (50.53%), Postives = 124/188 (65.96%), Query Frame = 3
Query:  165 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            F E F +TW +      E G+ +   LD+ SG GF SK++YLFG++ MK+KLV G+SAGTVTA+Y++S      DE+DFEFLGNRTG PYT+ TN++  GKGDRE +  LWFDP AD+H YT+ WN  +I+F VD +PIRV+KN+ +    +P NQP           D  T GG  KI+WS APF A
Sbjct:   30 FYESFDITWGNGRANIFENGQLLTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKG-TAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNNEKNGVAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKA 216          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 6.420e-50
Identity = 99/190 (52.11%), Postives = 124/190 (65.26%), Query Frame = 3
Query:  159 ATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN--SGRAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            A F  D ++TW D   +    G  + L LD++SG GF SK +YLFG+VSM++KLVPG+SAGTVT  Y+ S      DE+DFEFLGN +G+PYT+ TN+Y  GKGD+EQ+  LWFDP A++H YTILWN   I+F VD  PIR +KN  S    FP N+P           D  TRGGL K +WSKAPF A
Sbjct:   21 ANFQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKS-PGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTA 209          
BLAST of DY260115 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.868e-49
Identity = 97/190 (51.05%), Postives = 125/190 (65.79%), Query Frame = 3
Query:  159 ATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN--SGRAPFPMNQPHGGVFHAVGTKDGPTRGGLKKIEWSKAPFYA 722
            A F  D  V W +   + +  G+ + L LD++SG GF SK +YLFG++ M+IKLVPG+SAGTVT FY+ S   +  DE+DFEFLGN +G PYT+ TN+Y  GKGD+EQ+ +LWFDP A++H Y+ILWN   I+  VDD PIR +KN  S    FP N+P           D  TRGGL K +WSKAPF A
Sbjct:   22 ADFNTDVNVAWGNGRGKILNNGQLLTLSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKSEG-STWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKPMRMYASLWNADDWATRGGLVKTDWSKAPFMA 210          
The following BLAST results are available for this feature:
BLAST of DY260115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH25_ARATH1.058e-5251.85Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB3.079e-5253.19Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH15_ARATH4.021e-5251.05Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH1.170e-5153.19Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH16_ARATH1.996e-5150.79Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH7.583e-5152.66Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN1.689e-5050.79Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH14_ARATH2.206e-5050.53Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH22_ARATH6.420e-5052.11Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH24_ARATH1.868e-4951.05Xyloglucan endotransglucosylase/hydrolase protein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260115 ID=DY260115; Name=DY260115; organism=Citrus clementina; type=EST; length=1102bp
TAACCACAACATTTTATTAAAGTTCTCTTTCTAATTAGTAACAGATAATA
TTTTATTGTACGGCTTGTTTTACAGCTATGGCTATCCTAAGAAATGCAAT
AGCATTATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCTTGCGTTTTAG
GGCGACCGGCTACTTTTCTTGAGGATTTTAAAGTCACATGGTCCGATGCC
CATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGTTCTAGACCA
AAATTCAGGATGTGGGTTTGCTTCCAAAAGGCAGTACTTGTTCGGGCGTG
TAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCACT
GCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGATTT
TGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAATA
TCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGTTT
GACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCACCA
TATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAGTG
GAAGGGCTCCATTTCCAATGAACCAACCCCATGGGGGTGTATTCCACGCT
GTGGGAACCAAAGACGGGCCAACAAGAGGTGGTCTAAAAAAAATAGAATG
GAGCAAAGCTCCTTTTTATGCTTAATTACAAAAACCTTGAAATTGAGGGC
CGGCCAGTTCCCGGAACCAACAAATGTGGCCCCGAACCCAGGTAACGGGC
GGGAGGCAAAATATTATCCAAGCCCCTCCCCTCTCTGGAAGCAAGAAAAA
ACACAAGGGTTCCTCCCCACCCCACCAGAACCTATGATTTATGGCCTGGA
TAAAAACAAAAAACCCCCGACCCCCCCCCCGGAATGGCCTTGCCGGGGCA
TAAAAATTCAACCCCCCCCATTTAATTTAAAACGCTGGAACGGCAACCCC
CAATCTCCTAACCCAAAACGGGAATTATTACTTCCCCGAAACACCTCTCT
TTTGTTATATTCCTCTTATTTGTGTGTGAAAAAAACTTCATACCCCCATA
CT
back to top