DY260127

Overview
NameDY260127
Unique NameDY260127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1141
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260127 vs. ExPASy Swiss-Prot
Match: MIRO_CAEBR (Mitochondrial Rho GTPase OS=Caenorhabditis briggsae GN=CBG01740 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.537e-32
Identity = 78/208 (37.50%), Postives = 118/208 (56.73%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLD--------LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDGALNDAELNEF 773
            K+SL+ +   +   + VP       +P D  P+ V  +I+D S   E    L  E+++A+ + + Y+    +T+ R+   WLP +R+      + PII+ G K D        L    +  S  +++ PIM+   E+ETCVECSA TM  V ++FYYAQKAV++PT PL+D D + L  R ++AL R+F ICD D DG L+D ELN+F
Sbjct:   22 KTSLVMSLLEDEWVDAVPRRLDRVLIPADVTPENVTTSIVDLSIKEEEDNWLISEMRQANVICVVYSVTDDTTVERIQEKWLPLIRQAFGEYHETPIILVGNKSDGTANNTDKLPSGQSLVSSLQIL-PIMEANTEVETCVECSARTMKNVSEIFYYAQKAVIYPTRPLYDADTKQLTDRAKKALIRVFKICDRDNDGYLSDTELNDF 228          

HSP 2 Score: 23.0978 bits (48), Expect = 1.537e-32
Identity = 12/28 (42.86%), Postives = 16/28 (57.14%), Query Frame = 1
Query:  877 LPLDGFLFPQALFLEKGPP*NTLGLSRK 960
            L L GFL+   LF+E+G    T  + RK
Sbjct:  262 LMLAGFLYLHLLFIERGRHETTWAVLRK 289          
BLAST of DY260127 vs. ExPASy Swiss-Prot
Match: GEM1_ASPOR (Mitochondrial Rho GTPase 1 OS=Aspergillus oryzae GN=gem1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 8.230e-32
Identity = 77/206 (37.38%), Postives = 119/206 (57.77%), Query Frame = 3
Query:  183 KSSLIAAAATES-VPEKVPPVHAPTRLPPDF-YPDRVPVT-IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDGALNDAELNEFPVKWF 788
            KSSLI +      V  K+ P+     +PP    P+ V  T ++DTS+  + +  L  E+++++ ++L Y+     +  R++ +WLP  R L + VP+++   K DL  DH+ A  +EE M P+M +F+EI++C+  SA     V + F+  QKAV HP APLFD  E  LKP    AL+RIF + D D DG L+D EL +F ++ F
Sbjct:   16 KSSLITSLVKGVFVTNKIQPILPQITIPPTIGTPENVTTTTVVDTSALPQERSNLAREIRKSNVILLVYS--DHYSYERVALFWLPYFRSLGVNVPVVLCANKSDLAADHSEAQVIEEEMLPLMAEFKEIDSCIRTSAREHRNVNEAFFLCQKAVTHPIAPLFDSKESALKPAAVAALQRIFYLSDKDRDGYLSDKELEDFQMRCF 219          
BLAST of DY260127 vs. ExPASy Swiss-Prot
Match: GEM1_ASPFU (Mitochondrial Rho GTPase 1 OS=Aspergillus fumigatus GN=gem1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.075e-31
Identity = 77/206 (37.38%), Postives = 118/206 (57.28%), Query Frame = 3
Query:  183 KSSLIAAAATES-VPEKVPPVHAPTRLPPDF-YPDRVPVT-IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDGALNDAELNEFPVKWF 788
            KSSLI +      V  K+ PV     +PP    P+ V  T ++DTS+  + +  L  E+++++ ++L Y+     +  R++ +WLP  R L + VP+++   K DL  DH  A  +EE M P+M +F+EI++C+  SA     V + F+  QKAV HP APLFD  E  LKP    AL+RIF + D D DG L+D E+ +F ++ F
Sbjct:   16 KSSLITSLVKGVFVTNKIQPVLPQITIPPTIGTPENVTTTTVVDTSALPQERSNLAREIRKSNVILLVYS--DHYSYERVALFWLPYFRSLGVNVPVVLCANKSDLAADHTEAQVIEEEMLPVMAEFKEIDSCIRTSAREHRNVNEAFFLCQKAVTHPIAPLFDSKESALKPAAVAALQRIFYLSDKDRDGYLSDKEIEDFQMRCF 219          
BLAST of DY260127 vs. ExPASy Swiss-Prot
Match: GEM1_EMENI (Mitochondrial Rho GTPase 1 OS=Emericella nidulans GN=gem1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.833e-31
Identity = 75/206 (36.41%), Postives = 118/206 (57.28%), Query Frame = 3
Query:  183 KSSLIAAAATES-VPEKVPPVHAPTRLPPDF-YPDRVPVT-IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS-LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDGALNDAELNEFPVKWF 788
            KSSLI +      V  K+ P+     +PP    P+ V  T ++DTS+  + +  L  E+++++ ++L Y+     +  R++ +WLP  R L + VP+++   K DL  DH  T  +E+ M P+M +F+EI++C+  SA     V + F+  QKAV HP APLFD  E  LKP    AL+RIF + D D DG L+D E+ +F ++ F
Sbjct:   17 KSSLITSLVKGVFVTNKIQPILPQITIPPTIGTPENVTTTTVVDTSAVPQERSNLAREIRKSNVILLVYS--DHYSYERVALFWLPYFRSLGVNVPVVLCANKSDLAADHTETQVIEDEMLPLMSEFKEIDSCIRTSAREHRNVNEAFFLCQKAVTHPIAPLFDAKESALKPAAVAALQRIFYLSDKDRDGYLSDKEIKDFQMRCF 220          
BLAST of DY260127 vs. ExPASy Swiss-Prot
Match: GEM1_YARLI (Mitochondrial Rho GTPase 1 OS=Yarrowia lipolytica GN=GEM1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.776e-26
Identity = 73/211 (34.60%), Postives = 112/211 (53.08%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDR-VPVTIIDT--SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG----PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDGALNDAELNEFPVKWF 788
            KSSLI +   ++    +  +  P  +P  F   PD  +   I+DT  S+S      L+ E+++A+ + L Y+     +  R+S +WLP  R L + +PI++     D     N+   E ++     PI+++F+EIE+C+  SA     +   FY  QKAV+HP APLFD  E  LKP    AL+R+F + D D DG L+D E+ E  VK F
Sbjct:   18 KSSLITSLIKDTYVPNIQKLLPPITIPKGFSSSPDAPLSTVIVDTQFSNSPAEAEHLHREIRQANVIWLVYS--DHYSCERVSIFWLPYFRNLGVNLPIVLCANVFDDVDSWNSRDSERIISDEMIPILREFKEIESCIRVSAKLNHNINQAFYLCQKAVMHPIAPLFDAKEGKLKPNAVAALQRVFFLSDRDQDGYLSDQEMLELQVKCF 226          
BLAST of DY260127 vs. ExPASy Swiss-Prot
Match: GEM1_CANAL (Mitochondrial Rho GTPase 1 OS=Candida albicans GN=GEM1 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 6.748e-26
Identity = 71/169 (42.01%), Postives = 99/169 (58.58%), Query Frame = 3
Query:  294 TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDL----RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDGALNDAELNEFPVKWF 788
            TIIDTSSS  +   L +ELKRAD + L Y+     T  R+S +W+P  R + + +PII+   K DL    + +  +T+ +E + P++ +F+EIE  V CSA     V + FY  Q+AV HP +P+FD  E  LKP   + LKRIF + D D DG LN  EL+E   K F
Sbjct:   38 TIIDTSSS--DMTNLQKELKRADVIWLVYS--DHYTYERISLHWMPLFRSMGVNLPIILCANKSDLFPKSKSNLKSTNSDEFV-PLINEFKEIEAGVRCSAKNNYNVVEAFYLCQRAVTHPISPIFDAKEGNLKPGAIKPLKRIFWLSDTDQDGYLNFEELSELHKKCF 201          
BLAST of DY260127 vs. ExPASy Swiss-Prot
Match: GEM1_SCHPO (Mitochondrial Rho GTPase 1 OS=Schizosaccharomyces pombe GN=gem1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.503e-25
Identity = 73/207 (35.27%), Postives = 112/207 (54.11%), Query Frame = 3
Query:  183 KSSLIAAAATE----SVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL-DLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDGALNDAELNEFPVKWF 788
            KSSLI+A   E    S+P+  P +  P+   PD   D V + ++DT S    +  L  E+K+A+ + L Y+ N   +  R+S +WLP  R L + VPI++   K  DL       ++E  M P++ +F+EIE C+ CSA   I V ++FY  +  V++P  PL+D  E+T++     AL RIF + D + D  L+  ELN    K F
Sbjct:   16 KSSLISALIQEDNVTSIPKVFPIISIPSN--PDSNDD-VSLVLVDTQSDSNEREYLAAEIKKANVICLVYSDNY--SYERVSIFWLPYFRSLGVNVPIVLCENKSEDLDNYQGLHTIEHEMIPLINEFKEIEACILCSALEKINVNELFYMCRACVIYPITPLWDAKERTMRKATIHALSRIFFLIDKNNDDLLSVDELNSLSEKCF 217          
BLAST of DY260127 vs. ExPASy Swiss-Prot
Match: GEM1_YEAST (Mitochondrial Rho GTPase 1 OS=Saccharomyces cerevisiae GN=GEM1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.249e-24
Identity = 78/225 (34.67%), Postives = 112/225 (49.78%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDRVP--VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL---------------EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDGALNDAELNEFPVKWF*CSI 800
            KSSLI +         +  V  P  +P DF   P   P    +IDTS S  +   L+ ELK AD + L Y C+ +S    +S +WLP  R L + +P+I+   K D   + NA ++               +E   PI+ +F+EI+TC++ SA T   +   FY  Q+A+ HP +PLFD     LKP    ALKRIF++ D + D  L+D E+     K F  SI
Sbjct:   18 KSSLIVSLTKAEFIPTIQDVLPPISIPRDFSSSPTYSPKNTVLIDTSDS--DLIALDHELKSADVIWLVY-CDHES-YDHVSLFWLPHFRSLGLNIPVILCKNKCDSISNVNANAMVVSENSDDDIDTKVEDEEFIPILMEFKEIDTCIKTSAKTQFDLNQAFYLCQRAITHPISPLFDAMVGELKPLAVMALKRIFLLSDLNQDSYLDDNEILGLQKKCFNKSI 238          
BLAST of DY260127 vs. ExPASy Swiss-Prot
Match: GEM1_ASHGO (Mitochondrial Rho GTPase 1 OS=Ashbya gossypii GN=GEM1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.077e-23
Identity = 73/219 (33.33%), Postives = 110/219 (50.23%), Query Frame = 3
Query:  183 KSSLIAAAATE----SVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAG---------CKLDL----RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDGALNDAELNEFPVKWF 788
            KSSLIA    +    ++ + +P V  P       Y  +  + ++DT +S  +   L +ELK AD + L YA     +  R++ YW+   R L + +P+I+           C+ +L     GD      +E   PI++ F+E+ETC++CSA   + V   FY  Q+A+ HP APLFD     LKP   QALKRIF++ D D D  L+  E+     K F
Sbjct:   18 KSSLIACLVKDQFIPNLQDALPAVTIPRDFSASPYSPQNTI-LVDTKNS--DLAGLQKELKNADVIWLVYA--DHDSYERIALYWMMMFRSLGLNLPVILCRNKSDDGIEYCRSNLTAGGEGDCGTIVEDEEFIPILKAFKEVETCIKCSAKNKLNVNQAFYLCQRAITHPLAPLFDARIGELKPLAIQALKRIFVLSDKDQDDYLSSEEIAALQKKCF 231          
BLAST of DY260127 vs. ExPASy Swiss-Prot
Match: GEM1_KLULA (Mitochondrial Rho GTPase 1 OS=Kluyveromyces lactis GN=GEM1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.237e-23
Identity = 70/219 (31.96%), Postives = 108/219 (49.32%), Query Frame = 3
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP---VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK-------------LDLRGDHNATSLE-EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDGALNDAELNEFPVKWF 788
            K+SLIA    +     +  V  P  +P DF   R       ++DT +S  +   L++ELK AD + L Y+     +  R++ YW+   R L + +P+++   K             +D   D     +E E   PI+++F+E+ETC++ SA     V   FY  Q+ + +P APLFD     LKP    ALKR+F++ D D DG LND E+ +   K F
Sbjct:   18 KTSLIACLVKDQFISWLQDVLPPITIPKDFSSSRYSPENTVVVDTGNS--DLATLHKELKNADVIWLVYS--DHDSYERIALYWMMMFRSLGVNLPVVLCRNKCDDEVEFLSSANIMDSDDDQLDNKIEDEEFIPILREFKEVETCIKASAKFKFNVNQAFYLCQRTITNPVAPLFDARIGELKPLGVLALKRVFVLSDMDQDGFLNDDEITKLQKKCF 232          

HSP 2 Score: 21.1718 bits (43), Expect = 2.237e-23
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = 1
Query:  886 DGFLFPQALFLEKGPP*NTLGLSR 957
            DGFL    ++ EKG    T G+ R
Sbjct:  273 DGFLVLNKIYAEKGRHETTWGILR 296          
The following BLAST results are available for this feature:
BLAST of DY260127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
MIRO_CAEBR1.537e-3237.50Mitochondrial Rho GTPase OS=Caenorhabditis briggsa... [more]
GEM1_ASPOR8.230e-3237.38Mitochondrial Rho GTPase 1 OS=Aspergillus oryzae G... [more]
GEM1_ASPFU1.075e-3137.38Mitochondrial Rho GTPase 1 OS=Aspergillus fumigatu... [more]
GEM1_EMENI1.833e-3136.41Mitochondrial Rho GTPase 1 OS=Emericella nidulans ... [more]
GEM1_YARLI1.776e-2634.60Mitochondrial Rho GTPase 1 OS=Yarrowia lipolytica ... [more]
GEM1_CANAL6.748e-2642.01Mitochondrial Rho GTPase 1 OS=Candida albicans GN=... [more]
GEM1_SCHPO1.503e-2535.27Mitochondrial Rho GTPase 1 OS=Schizosaccharomyces ... [more]
GEM1_YEAST8.249e-2434.67Mitochondrial Rho GTPase 1 OS=Saccharomyces cerevi... [more]
GEM1_ASHGO1.077e-2333.33Mitochondrial Rho GTPase 1 OS=Ashbya gossypii GN=G... [more]
GEM1_KLULA2.237e-2331.96Mitochondrial Rho GTPase 1 OS=Kluyveromyces lactis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260127 ID=DY260127; Name=DY260127; organism=Citrus clementina; type=EST; length=1141bp
AACACTATTTATTTTCTCTCACCGATCTCATTAAAAGCGGAAACCCCTCT
TACTAATATTATTTTCCGTCTCGCTCTCTCTCTCTCTCCCTCATAATTTA
AAATAAATCAATGCCTGGTGGTTCAGGCTCCAGTAGCCGAACCGGCGTGA
GAGTGGTGGTTGTTGGCGATCGAGGCACTGGAAAATCGAGTCTGATAGCG
GCGGCCGCAACCGAGTCGGTCCCTGAGAAGGTCCCACCGGTCCACGCTCC
TACGCGCCTGCCGCCCGATTTTTATCCCGATCGTGTCCCCGTCACTATCA
TTGACACCTCTTCCAGCTTGGAGAATAAAGGTAAGCTTAATGAAGAATTG
AAGCGAGCAGATGCTGTGGTGTTAACATATGCATGTAATCAGCAATCAAC
TCTTTCTCGTTTGAGTTCCTATTGGCTCCCAGAGCTTCGTCGTTTAGAGA
TTAAGGTGCCCATAATTGTAGCTGGGTGTAAGCTAGATCTGCGCGGTGAT
CATAATGCCACAAGCCTCGAGGAGGTTATGGGACCAATCATGCAACAGTT
CAGGGAGATTGAAACTTGTGTAGAATGTTCTGCAACTACTATGATTCAGG
TCCCTGATGTTTTCTATTATGCTCAAAAAGCAGTACTTCATCCAACAGCT
CCATTGTTTGATCACGATGAACAAACTTTGAAACCTCGGTGCCGTCAGGC
ATTGAAAAGGATATTTATTATCTGTGATCATGACATGGACGGTGCCCTAA
ATGATGCAGAGTTAAATGAGTTTCCGGTTAAATGGTTTTAATGCTCCATT
ACACCCTGGTGAAATAGTAAGGCGTAAAGAGGGGTGTACCAAAAAAGCAC
CATGGAGGGATCCATGGCCTTGGGTCTTACCCTTAGATGGTTTCCTTTTC
CCCCAGGCTCTTTTCCTTGAAAAAGGGCCTCCTTGAAACACCTTGGGCTT
GTCCCGGAAAAATTTTGGGTAAGGGGAAATAATTTAAAACTGAGGGGAAG
TTTTTTTTTCCCGGTTCCAAACATACCCCCCCCCCCCGGATCCGAGAAAA
AAATGGGAAGAAGGTTGGGAAAAAAAAAGAATGGGGGAAGAGGAGTTCCT
GTTCCCAGGGAAAAAAAATAAACCCTTTCTTCTTTTTCCCC
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