DY260127

Overview
NameDY260127
Unique NameDY260127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1141
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260127 vs. ExPASy Swiss-Prot
Match: GEM1_CANGA (Mitochondrial Rho GTPase 1 OS=Candida glabrata GN=GEM1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.466e-22
Identity = 74/217 (34.10%), Postives = 109/217 (50.23%), Query Frame = 3 
Query:  183 KSSLIAAAATESVPEKVPPVHAPTRLPPDF----YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA------TSLE-EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCRQALKRIFIICDHDMDGALNDAELNEFPVKWF*CSI 800
            K+SLI +         +  V  P  +P DF    Y  +  V +IDT +S  +   +  ELK AD + L Y+   + +  R+S YW+   R L + +P+I+   K D    ++       T +E E   PI+  F+E++TCV+ SA T   V   FY  Q+++ +P +PLFD     LKP    AL RIF + D D DG LND E+ +   K F  SI
Sbjct:   18 KTSLIVSLVKGQFIPNLQAVLPPVTIPRDFSSSPYSPKNTV-LIDTDNS--DPLAIQRELKNADVIWLVYS--DKDSYERISLYWMITFRSLGLNIPVILCKNKCDQYTTNSPLEDFLDTKIEDEEFIPILMAFKEVDTCVKASAKTHFDVNQSFYLCQRSISYPISPLFDAKVGDLKPSAVAALSRIFFLSDEDQDGFLNDNEIMDLQRKCFGKSI 229
The following BLAST results are available for this feature:
BLAST of DY260127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GEM1_CANGA3.466e-2234.10Mitochondrial Rho GTPase 1 OS=Candida glabrata GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260127 ID=DY260127; Name=DY260127; organism=Citrus clementina; type=EST; length=1141bp
AACACTATTTATTTTCTCTCACCGATCTCATTAAAAGCGGAAACCCCTCT
TACTAATATTATTTTCCGTCTCGCTCTCTCTCTCTCTCCCTCATAATTTA
AAATAAATCAATGCCTGGTGGTTCAGGCTCCAGTAGCCGAACCGGCGTGA
GAGTGGTGGTTGTTGGCGATCGAGGCACTGGAAAATCGAGTCTGATAGCG
GCGGCCGCAACCGAGTCGGTCCCTGAGAAGGTCCCACCGGTCCACGCTCC
TACGCGCCTGCCGCCCGATTTTTATCCCGATCGTGTCCCCGTCACTATCA
TTGACACCTCTTCCAGCTTGGAGAATAAAGGTAAGCTTAATGAAGAATTG
AAGCGAGCAGATGCTGTGGTGTTAACATATGCATGTAATCAGCAATCAAC
TCTTTCTCGTTTGAGTTCCTATTGGCTCCCAGAGCTTCGTCGTTTAGAGA
TTAAGGTGCCCATAATTGTAGCTGGGTGTAAGCTAGATCTGCGCGGTGAT
CATAATGCCACAAGCCTCGAGGAGGTTATGGGACCAATCATGCAACAGTT
CAGGGAGATTGAAACTTGTGTAGAATGTTCTGCAACTACTATGATTCAGG
TCCCTGATGTTTTCTATTATGCTCAAAAAGCAGTACTTCATCCAACAGCT
CCATTGTTTGATCACGATGAACAAACTTTGAAACCTCGGTGCCGTCAGGC
ATTGAAAAGGATATTTATTATCTGTGATCATGACATGGACGGTGCCCTAA
ATGATGCAGAGTTAAATGAGTTTCCGGTTAAATGGTTTTAATGCTCCATT
ACACCCTGGTGAAATAGTAAGGCGTAAAGAGGGGTGTACCAAAAAAGCAC
CATGGAGGGATCCATGGCCTTGGGTCTTACCCTTAGATGGTTTCCTTTTC
CCCCAGGCTCTTTTCCTTGAAAAAGGGCCTCCTTGAAACACCTTGGGCTT
GTCCCGGAAAAATTTTGGGTAAGGGGAAATAATTTAAAACTGAGGGGAAG
TTTTTTTTTCCCGGTTCCAAACATACCCCCCCCCCCCGGATCCGAGAAAA
AAATGGGAAGAAGGTTGGGAAAAAAAAAGAATGGGGGAAGAGGAGTTCCT
GTTCCCAGGGAAAAAAAATAAACCCTTTCTTCTTTTTCCCC
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