DY260132

Overview
NameDY260132
Unique NameDY260132
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1026
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260132 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.021e-38
Identity = 88/164 (53.66%), Postives = 116/164 (70.73%), Query Frame = 2
Query:  263 FKFDPSKQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNK-NPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIDYDE--QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAEDLIVKGRQSWWCGDQL-GVGVNETRYTV 742
            FKF P ++S  SR MT  Y  D+  YA++D    GAGS GLS AY L K  P+++IAI++ S +PGGG WLGGQLFSAMV+ +P+ +FL+ELG+ Y+E    NYVV+KHA+LFTST+MSK+L+ PNVKLFNA   EDLI +  ++     Q+ GV VN T  T+
Sbjct:   48 FKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAIVEASVSPGGGAWLGGQLFSAMVMRRPAEVFLNELGVPYEEDANPNYVVVKHASLFTSTLMSKVLSFPNVKLFNATAVEDLITRPTENG--NPQIAGVVVNWTLVTL 209          
BLAST of DY260132 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.105e-15
Identity = 45/132 (34.09%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  296 SREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAEDLIVK-GRQS 688
            SR +   Y  D++     D    GAG +G+   Y L K    ++AI ++  + GGG W G   F+ +VV + +   LDE G+DY +  N + +  +    ST+ SK + +   K+FN V  EDL+VK GR S
Sbjct:    7 SRAIVEAYFNDLLQNLQLDIAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSVGGGIWGGAMGFNRVVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMVEVEDLVVKDGRVS 136          

HSP 2 Score: 28.1054 bits (61), Expect = 2.105e-15
Identity = 17/36 (47.22%), Postives = 20/36 (55.56%), Query Frame = 3
Query:  675 KAGRVGGVVTNWALVSMKPDTPSLQDPHVMQAKVVV 782
            K GRV G+V NW  V M   T    DP  ++AK VV
Sbjct:  131 KDGRVSGLVINWTPVMM---TGLHVDPLTVEAKFVV 163          
BLAST of DY260132 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.620e-15
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  281 KQSIASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAEDLIVK 676
            K  + SR +  +Y  D++   + D    GAG +G+   Y L K    ++AI ++  + GGG W GG  F+ +VV + +   LDE  I Y+E +    +  A    +TI SK + +  VK+FN V  EDL+VK
Sbjct:    3 KDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMVEVEDLVVK 132          

HSP 2 Score: 26.1794 bits (56), Expect = 4.620e-15
Identity = 15/36 (41.67%), Postives = 19/36 (52.78%), Query Frame = 3
Query:  675 KAGRVGGVVTNWALVSMKPDTPSLQDPHVMQAKVVV 782
            K  RV G+V NW  V M   T    DP  ++AK V+
Sbjct:  132 KDDRVSGIVINWTPVKM---TGLHVDPLTVEAKYVI 164          
BLAST of DY260132 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.317e-14
Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  296 SREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAEDLIVK 676
            SR +  +Y  D++   + D    GAG +G+  AY L K    ++AI ++  + GGG W GG  F+ +VV + +   LDE  I Y+E +    +  A    +TI SK + +  VK+FN +  EDL+VK
Sbjct:    8 SRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMIEVEDLVVK 132          

HSP 2 Score: 25.7942 bits (55), Expect = 1.317e-14
Identity = 15/36 (41.67%), Postives = 19/36 (52.78%), Query Frame = 3
Query:  675 KAGRVGGVVTNWALVSMKPDTPSLQDPHVMQAKVVV 782
            K  RV G+V NW  V M   T    DP  ++AK V+
Sbjct:  132 KDNRVSGIVINWTPVLM---TGLHVDPLTVEAKYVI 164          
BLAST of DY260132 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-14
Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  296 SREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAEDLIVK 676
            +R +  +Y  D++   + D    GAG +G+  AY L K    ++AI ++  + GGG W GG  F+ +VV   +   LDE GI Y+E +    +  A    +TI SK++ +  VK+FN +  EDL++K
Sbjct:    8 TRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMIEVEDLVIK 132          

HSP 2 Score: 23.8682 bits (50), Expect = 1.712e-14
Identity = 14/36 (38.89%), Postives = 18/36 (50.00%), Query Frame = 3
Query:  675 KAGRVGGVVTNWALVSMKPDTPSLQDPHVMQAKVVV 782
            K  RV G+V NW  V M        DP  ++AK V+
Sbjct:  132 KDNRVSGIVINWTPVLM---AGLHVDPLTIEAKYVI 164          
BLAST of DY260132 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.144e-12
Identity = 46/145 (31.72%), Postives = 78/145 (53.79%), Query Frame = 2
Query:  290 IASREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAEDLIVKGRQSWWCGDQLGVGVN 724
            + SR +   Y   +    + D    GAG +GL+ AYEL KN   ++A+ ++  TPGGG W GG +F+ +V+ K    FL E+ I+Y+ +++++V+  +  F S ++ +   +    +FN V  ED+ V+       G   GV VN
Sbjct:    7 LISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV-DSVHFASGLLYR-ATKAGAIVFNNVSVEDVAVQN------GRVCGVVVN 142          
BLAST of DY260132 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.239e-12
Identity = 47/168 (27.98%), Postives = 84/168 (50.00%), Query Frame = 2
Query:  296 SREMTPTYMTDMITYADTDXXXXGAGSAGLSCAYELNKNPNIQIAIIQQSATPGGGPWLGGQLFSAMVVPKPSHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVPAEDLIVK-----GRQSWWCGDQLGVGVNETRYTVFAGSPCNASQGGCE 784
            SR +   YM D++ Y + D    G G +GL+  Y L +   +++A+ ++  + GGG W GG +F+ +VV       LDE GI  +  D    +  +   TST+ S+   +  +K+FN +  ED++++     G    W   ++  G++    TV A +  +A+   CE
Sbjct:    9 SRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR-ACQAGLKIFNLMSIEDVMIRDEGITGLVLNWSSVEM-AGLHVDPLTVRARAVIDATGHDCE 173          
The following BLAST results are available for this feature:
BLAST of DY260132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
THI4_ASPOR1.021e-3853.66Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_PYRKO2.105e-1534.09Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU4.620e-1534.09Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB1.317e-1434.65Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRHO1.712e-1433.86Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_THEMA2.144e-1231.72Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_METTH6.239e-1227.98Putative thiazole biosynthetic enzyme OS=Methanoba... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260132 ID=DY260132; Name=DY260132; organism=Citrus clementina; type=EST; length=1026bp
CACTGCTGCAAATCTTTTTACTTCTCATTATCAAACTTCTAAGCAGCAGG
GGAAGGAGGGGTTAAAAAAAAAAAACATGGCAGCCATGACTTCCACAGCT
TTCCCTCCTTCAGTTTCCTCCACCACCAATAAGCTCTTTGACTCATCCTT
TCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCCACCCATCAAAT
CTTCCCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTAT
GACTTGAACACTTTCAAGTTTGACCCCAGCAAACAATCCATTGCTTCTCG
TGAAATGACACCCACGTACATGACGGACATGATCACTTATGCTGACACTG
ATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAG
CTCAACAAAAACCCCAACATTCAGATTGCTATTATCCAACAGTCTGCTAC
CCCCGGCGGTGGCCCGTGGCTCGGTGGACAGCTCTTCTCGGCCATGGTTG
TGCCCAAACCATCCCACATCTTCCTTGACGAGCTTGGCATCGACTACGAT
GAGCAAGACAACTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCAC
TATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAG
TGCCAGCCGAGGACTTGATAGTCAAAGGCAGGCAGAGTTGGTGGTGTGGT
GACCAACTGGGCGTTGGTGTCAATGAAACCCGATACACCGTCTTTGCAGG
ATCCCCATGTAATGCAAGCCAAGGTGGTTGTGAGCCCCTTGAGGCCAGAC
TGGCCCCTTTTGGGTGCCCCCGGATTAAAGAGGTTGGAAAAATATCCAAA
TGATTGAGGAAGGCCCCCGGAAAGAAGGCACCGAACATGAACCCCCCCAA
ATAACCTTTTCGGAAGGCCGACCCCAGAAAGTTGCTCGCCGCTTCAAAAT
TTTACCGCCCATGCAGCTTCCCAAAATTCAAGTGGCCCCCCCAAATCGGG
CCCCCCCATCTGCAACCCCCGCTAAA
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