DY260151

Overview
NameDY260151
Unique NameDY260151
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1011
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1433 contig Ccv1_Contig1433:1..1011. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260151 vs. ExPASy Swiss-Prot
Match: PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.790e-11
Identity = 54/224 (24.11%), Postives = 101/224 (45.09%), Query Frame = 3
Query:   75 FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSPLIRGLCKEKS 746
            FNSLI  +     +K AL L+ +M+  G   +   ++ L+      R  IK    L+ +M    + LD+ + N LI+  C+ G V   + +F+ ML+ G    N S   L+  LC+ G +++   F      R   P +    SL+  LC    +++ L +F  +        +      +  LC  GF  +A  L++E ++ G   +   +S L++ +  +++
Sbjct:  497 FNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR-RGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQET 719          
BLAST of DY260151 vs. ExPASy Swiss-Prot
Match: PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.790e-11
Identity = 56/275 (20.36%), Postives = 118/275 (42.91%), Query Frame = 3
Query:   78 NSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSPLIRGLCKEKSFQLPLKCWTPCGIKNWAPCLDVFCFFIPPLFPTGRTEKAVRLRRD*FEGATF 902
            N L+K +  + ++++A  ++DE+   G   +L  ++ ++ G  A R  +++   +LE+M       D  +  +L+   CK G   +   + D M +  +     +Y  ++ +LCK+    +    +D    R ++P    C  +++ LC    + E+  L+  ML +     + +    +  LC  G  + A  L +E  ++G     + Y+ LI G+C++       + W     +   P    +   I  L   G  ++ VR+  +  E   F
Sbjct:  195 NLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVA-RGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEF-EKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCF 467          
BLAST of DY260151 vs. ExPASy Swiss-Prot
Match: PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.790e-11
Identity = 58/238 (24.37%), Postives = 109/238 (45.80%), Query Frame = 3
Query:   30 ERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICY-IFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSPLIRGLCKE 740
            E K   ++ DS+  ++N LI+     G+L+ A    DEMV+ G   +   ++ L+ GL      I+A   L+ ++ +    LD  + N+LI   C+ G  +    + D M+  G+     +YT+L+  LC+K   ++    ++    +   P L    +L++  C    +  +  L + M +       D+ Y   +  LC  G    A  L+ E+ ++G   D ++Y+ LI G  K+
Sbjct:  317 EMKEIGLVPDSV--SYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENK-IEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDM-MSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKK 550          
BLAST of DY260151 vs. ExPASy Swiss-Prot
Match: PPR95_ARATH (Pentatricopeptide repeat-containing protein At1g62915, mitochondrial OS=Arabidopsis thaliana GN=At1g62915 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.054e-11
Identity = 59/228 (25.88%), Postives = 97/228 (42.54%), Query Frame = 3
Query:   75 FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFS-----SNAHALVEELLQQGCNLDQMAYSPLIRGLCKEK 743
            F +LI  +        A+ L+D MV+ G +  L  + A+V GLC  R        LL KM     + +    + +I + CK     D   +F  M  +G+     +Y++L+  LC  G   D          RK  P L    +L++    K  L ++ +L+E M+      RS    IF     + GF        A  ++E ++++ C  + + Y+ LI G CK K
Sbjct:  186 FTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLC-KRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMI-----KRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAK 407          
BLAST of DY260151 vs. ExPASy Swiss-Prot
Match: PP445_ARATH (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.054e-11
Identity = 55/224 (24.55%), Postives = 103/224 (45.98%), Query Frame = 3
Query:   75 FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECM--LVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSPLIRGLCKE 740
            +N LIK  + + N+  A+ ++++M+       +  +++L+ G C S  +  +   LL  M       DQ +   +I + CK   V +   +FD + Q+G+      YT L+   CK G + + H   +   ++  LP      +L+  LC    LKE+  L E M  +   P + +D   I + +L   G   +A++  +++L  G   D   Y+  I+  C+E
Sbjct:  431 YNELIKG-YCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS-GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDT--ILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCRE 650          
BLAST of DY260151 vs. ExPASy Swiss-Prot
Match: PP218_ARATH (Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.054e-11
Identity = 61/241 (25.31%), Postives = 109/241 (45.23%), Query Frame = 3
Query:   30 ERKLSKIIEDSMI--PNFNSLIKMVHARG-NLKAALLLVDEMVRWGQELSLSV-FSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSPLIRGLCKE 740
            E  +SKI++   +   +  + + +   RG NL+ AL + D M +       SV +S L+ GLC     ++   GL ++M +   +    +  +LI+A C +GL+     +FD M+ RG      +YT L+  LC+ G I++ +         +  P +    +L+   C    +  + +L   M               +E LC  G    A  L++ +L  G + D ++Y+ LI GLC+E
Sbjct:  215 EMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEV-GRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCRE 454          
BLAST of DY260151 vs. ExPASy Swiss-Prot
Match: PPR27_ARATH (Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.209e-11
Identity = 62/287 (21.60%), Postives = 122/287 (42.51%), Query Frame = 3
Query:   27 YERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLC--ASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSPLIRGLCKEKSFQLPLKCWTPCGIKNWAPCLDVFCFFIPPLFPTGRTEKAVRLRRD 881
            Y+  + + I+ ++   FN +I  +   G +  A  ++++M  +G   ++  ++ L+ G C       +     +L++M +     +  + N+LI    K   +    K+F  ML + +     SY +L+  LC  G I +  +  D   +    P L    +L+   C   +LKE+L +F  +        + +  + ++  C  G   +  AL EE+ ++G   D   Y+ LI GLC+  + +   K +     K   P L  F   +      G + KA  L ++
Sbjct:  211 YKEMIRRKIQPNVF-TFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKE 495          
BLAST of DY260151 vs. ExPASy Swiss-Prot
Match: PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 5.209e-11
Identity = 49/194 (25.26%), Postives = 88/194 (45.36%), Query Frame = 3
Query:  285 SLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICY-IFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSPLIRGLCKEKSFQLPLKCWTPCGIKNWAPCLDVFCFFIPPLFPTGRTEKA 863
            S NLL+QA C    +    ++F  ML+R +  + +SY  L+   C+KG +       D   N+ ++P      +L+  LC K  L+E+ +L  C +    C    + Y   +   C    + +A  +++++L  GC+ + ++Y  LI GLC +  F    K       K ++P   V    +      G+ E+A
Sbjct:  192 SYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLL-CRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEA 384          
BLAST of DY260151 vs. ExPASy Swiss-Prot
Match: PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.209e-11
Identity = 57/239 (23.85%), Postives = 108/239 (45.19%), Query Frame = 3
Query:    3 YLDLDRDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSPL 719
            ++D  RD+++ K   +       +F  LI  V    NL+ A+ LV ++   G +    +++ ++KG C      +A  G+ +KM +   + DQ + N LI    K G V + +     M+  G   +  +YT+L+  +C+KG      +  +  + R   P      +L+  LC  +L+ + ++L+E M  S   L S+     +  L  +G  + A+ + +  +      D  AYS L
Sbjct:  216 FVDEMRDDFDVKPDLV-------SFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEA-VGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYSTL 446          
BLAST of DY260151 vs. ExPASy Swiss-Prot
Match: PP102_ARATH (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.803e-11
Identity = 60/239 (25.10%), Postives = 103/239 (43.10%), Query Frame = 3
Query:   33 RKLSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSPLIRGLCKE 740
            R LS +IE  + PN   FN+LI      G L  A  L DEM++   +  +  +S+L+ G C     +     + E M       +  + N LI   CK   + +G ++F  M QRGL     +YTTL+    +     +    +    +    P +    +L++ LC    L++++ +FE +  S          I +E +C  G   +   L   L  +G   D + Y+ +I G C++
Sbjct:  316 RLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC-MHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRK 553          
The following BLAST results are available for this feature:
BLAST of DY260151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PP444_ARATH1.790e-1124.11Pentatricopeptide repeat-containing protein At5g64... [more]
PP388_ARATH1.790e-1120.36Pentatricopeptide repeat-containing protein At5g16... [more]
PP152_ARATH1.790e-1124.37Pentatricopeptide repeat-containing protein At2g15... [more]
PPR95_ARATH3.054e-1125.88Pentatricopeptide repeat-containing protein At1g62... [more]
PP445_ARATH3.054e-1124.55Pentatricopeptide repeat-containing protein At5g65... [more]
PP218_ARATH3.054e-1125.31Pentatricopeptide repeat-containing protein At3g07... [more]
PPR27_ARATH5.209e-1121.60Pentatricopeptide repeat-containing protein At1g09... [more]
PP298_ARATH5.209e-1125.26Pentatricopeptide repeat-containing protein At4g01... [more]
PP161_ARATH5.209e-1123.85Pentatricopeptide repeat-containing protein At2g17... [more]
PP102_ARATH6.803e-1125.10Pentatricopeptide repeat-containing protein At1g63... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260151 ID=DY260151; Name=DY260151; organism=Citrus clementina; type=EST; length=1011bp
TTTATTTAGACCTAGACCGAGACGAGTATGAGAGAAAACTAAGTAAGATT
ATTGAAGATTCCATGATACCTAATTTTAACTCTCTTATAAAGATGGTACA
TGCACGTGGTAATTTAAAAGCTGCATTGCTGTTGGTAGATGAAATGGTTC
GCTGGGGTCAAGAACTGTCTCTGTCTGTCTTCTCAGCACTAGTAAAGGGG
CTGTGTGCTTCTCGCTCCCATATCAAGGCGTGCACTGGTCTTCTTGAGAA
AATGCCAAAATTGGCCAATAAGCTAGACCAAGAATCTCTCAATTTGCTTA
TTCAAGCATGCTGCAAGAAGGGATTGGTACGTGATGGGAAGAAAATTTTT
GATGGGATGCTTCAGAGGGGTCTAACAATTGAGAATGAGAGTTATACTAC
TCTATTAATGAGTTTGTGTAAGAAAGGCTTCATCAAGGATCTTCATGCTT
TCTGGGATATTGCTCAAAATAGAAAGTGGTTGCCTGGGTTGGAGGATTGC
AAATCACTTGTGGAATGTCTTTGCCATAAAAAATTGCTGAAAGAATCATT
ACAGCTTTTTGAATGCATGTTAGTGTCCTGTCCCTGCTTAAGGTCAGATA
TTTGTTATATATTCCTGGAAAAGCTTTGTGTTACAGGGTTCTCCAGCAAT
GCACATGCCCTGGTGGAAGAACTTCTACAGCAGGGTTGCAACTTGGATCA
AATGGCTTATAGCCCTCTTATAAGAGGGTTATGTAAGGAGAAAAGTTTTC
AGTTGCCTTTAAAATGCTGGACCCCATGCGGGATAAAAAACTGGGCTCCC
TGCTTGGATGTTTTCTGTTTCTTTATTCCCCCGCTGTTCCCAACTGGGAG
AACTGAAAAAGCCGTTCGCTTAAGAAGAGATTAATTTGAAGGAGCCACCT
TTATTTTTGGTTTCCTTCTCCCGTGCCTTCCTAAGTGGGGATTTTGGGGG
ACCGGGAAAGGCCGAAAAACCCCCCAAGTTTTGTTCCAAAAAATGTTTTC
CCCCCGGGGGA
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