DY260155

Overview
NameDY260155
Unique NameDY260155
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1204
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 6.605e-35
Identity = 79/181 (43.65%), Postives = 104/181 (57.46%), Query Frame = 2
Query:   17 EKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFLKRLQSNNCSILSVYTAWL*GLQEHYGKLH 559
            EKF  Y+            +  +N    ++ VDE TI +  ILG T TG+F+D+  L DL+   N     +  IHVD ASG    PF+ P LEWDFRLP V SIN SGHKYGLVY GVGW++WR K+ LP+ELVF ++YLG   PT  +NF +    +   I+  Y  +L    E Y ++H
Sbjct:  164 EKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLNDLVEDYNNTHDNEVVIHVDGASGAMFTPFVEPGLEWDFRLPNVVSINTSGHKYGLVYPGVGWILWRDKEYLPEELVFDVSYLGGHMPTMAINFSR----SASQIIGQYYNFLRFGYEGYRQIH 340          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.510e-32
Identity = 72/169 (42.60%), Postives = 94/169 (55.62%), Query Frame = 2
Query:    2 CRYALEKFARYFXXXXXXXXXXX-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLPDLLT----KKNEETGWDTPIHVDAASGGFIAPF--------LYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNF 469
            C+ ALEKF RYF             +++++P    + VDENTI    ILG+T TG  E+V+ + D+L+    K  + +  D PIH D ASGGFI PF         Y    W F  P V S+N SGHK+GL   G+GWV+WR +  L DEL F + YLG  + TF LNF
Sbjct:  191 CQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIHADGASGGFIIPFGFEKEHMKAYGMERWGFNHPRVVSMNTSGHKFGLTTPGLGWVLWRDESLLADELRFKLKYLGGVEETFGLNF 359          

HSP 2 Score: 34.2686 bits (77), Expect = 3.510e-32
Identity = 20/54 (37.04%), Postives = 30/54 (55.56%), Query Frame = 3
Query:  471 SKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARAPREGLENT----GRFEILS 620
            S+   Q++ QY+ F+ LG  GY+   +N +  ARA    L N+    G FEI+S
Sbjct:  360 SRPGFQVVHQYFNFVSLGHSGYRTQFQNSLFVARAFSFELLNSSKLPGCFEIVS 413          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_METTP (L-tyrosine decarboxylase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=mfnA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.941e-15
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  107 LVDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL 403
            L+D+ T+C+  I G+T  G+ + +  L +L  +         P+HVDAA GGF+ PFL  D  WDFR   V+SI +  HK G+     G +++R+ D L
Sbjct:  154 LIDDRTVCLVGIAGTTEFGQVDPIGDLSELAIENG------IPLHVDAAFGGFVLPFLEKDCMWDFRAEGVQSITIDPHKMGMSPIPAGGLIFRSSDPL 246          

HSP 2 Score: 29.6462 bits (65), Expect = 2.941e-15
Identity = 12/46 (26.09%), Postives = 23/46 (50.00%), Query Frame = 3
Query:  423 TSTTLDLINRLSPSTSSKGSSQIIAQYYQFIRLGFEGYKNIMENCM 560
            T T    ++R +  T ++  +   A Y   + LG +GY+ ++  CM
Sbjct:  251 TETYYLTVSRQASLTGTRSGAAAAATYAVIMHLGIDGYRKVVRRCM 296          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_UNCMA (L-tyrosine decarboxylase OS=Uncultured methanogenic archaeon RC-I GN=mfnA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.107e-14
Identity = 39/119 (32.77%), Postives = 66/119 (55.46%), Query Frame = 2
Query:   86 NPVKAVELVDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGS 442
            +P +   L+D+NTI + A+ G+T  G+ + ++ +  L  +       D  +HVDAA GGF+ PF+    ++DF +P V+SI +  HK GL     G +++R+ + L   L  +  YL S
Sbjct:  146 DPSEMAALIDKNTIALVAVAGTTEFGQIDPIEEIGRLAQEH------DLYLHVDAAFGGFVIPFMDRPAKFDFEIPGVQSITIDPHKMGLSTIPSGGLLYRS-ESLMKVLEINAQYLTS 257          

HSP 2 Score: 33.4982 bits (75), Expect = 3.107e-14
Identity = 20/52 (38.46%), Postives = 27/52 (51.92%), Query Frame = 3
Query:  462 STSSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARAPREGLENTGRFEIL 617
            S +S  S+  + QY     LG  GY+ I+  CM N R  RE LE+ G   I+
Sbjct:  268 SGASAASAYAVLQY-----LGRAGYREIVATCMENTRILREQLEDMGMEPII 314          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_THEGJ (L-tyrosine decarboxylase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=mfnA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.570e-12
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 2
Query:   77 YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK 394
            Y +N     E + +NTI +  I G+T  G  +D+  L DL         +  P+HVDAA GGF+ PF     Y   ++DFRL  VKSI +  HK G+V    G +++R +
Sbjct:  144 YTVNVRDVEEKITDNTIGIVGIAGTTGLGVVDDIPALSDLALD------YGLPLHVDAAFGGFVIPFAKALGYDIPDFDFRLKGVKSITIDPHKMGMVPIPAGGIIFRER 247          

HSP 2 Score: 26.1794 bits (56), Expect = 1.570e-12
Identity = 11/32 (34.38%), Postives = 17/32 (53.12%), Query Frame = 3
Query:  465 TSSKGSSQIIAQYYQFIRLGFEGYKNIMENCM 560
            T ++  +  +A +     LGFEGYK I+   M
Sbjct:  271 TGTRPGANALAVWAMIKHLGFEGYKEIVRKAM 302          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_METLZ (L-tyrosine decarboxylase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=mfnA PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.470e-12
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 2
Query:   77 YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR 388
            Y ++  K  E+VD+NTI V+AI G+T  G  +DV+ +  +  +       D   HVDAA GG + PFL     +DF +P V SI++  HK G+     G ++ R
Sbjct:  142 YTVDCDKMAEMVDKNTISVSAIAGTTEYGMIDDVERIAKIALEN------DLFFHVDAAFGGMVIPFLPNPAPFDFEVPGVSSISLDPHKMGMSTIPCGCLLLR 239          

HSP 2 Score: 28.4906 bits (62), Expect = 4.470e-12
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 3
Query:  492 IAQYYQFIRL-GFEGYKNIMENCMGNARAPREGLENTG 602
            +A  Y  I+L G EG++ ++  CM N R   EG+E  G
Sbjct:  271 VAGAYAVIKLLGREGFRAVVAGCMENTRRLIEGMEAFG 308          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_METKA (L-tyrosine decarboxylase OS=Methanopyrus kandleri GN=mfnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.606e-12
Identity = 57/158 (36.08%), Postives = 79/158 (50.00%), Query Frame = 2
Query:    8 YALEKFARYFXXXXXXXXXXXGYYVMNPVKAVE-LVDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFL---YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYL---GSDQPTFT 460
            ++ EK AR              Y V   V AV+ L+  +T  +  I+G+T TG  +D++ L D+     E+ G   P+HVDAA GGF APFL   YP   + F L  V S+ V  HK GLV    G +V+R  D+ P  +  +  YL   G+ Q T T
Sbjct:  107 FSFEKAARMLRMKLVEAPLRSDYTV--DVDAVQDLISRDTALIVGIVGTTETGSVDDIEALSDVA----EDHG--VPLHVDAAFGGFTAPFLREEYPLPRFGFDLEAVVSVTVDPHKMGLVPPPAGGIVFR-DDEFPKAIEVYAPYLSGGGASQYTIT 255          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_ARCFU (L-tyrosine decarboxylase OS=Archaeoglobus fulgidus GN=mfnA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 7.534e-12
Identity = 33/109 (30.28%), Postives = 57/109 (52.29%), Query Frame = 2
Query:   77 YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL 403
            Y ++  +  +L+DENT+ +  I G+T  G+ + +  L  L  ++  E      +HVDAA GG + PF+     +DF+   V SI +  HK G+     G +++R +  L
Sbjct:  133 YKVDVGQVEDLMDENTVAIVGIAGTTELGQIDPIVELSKLAEERQVE------LHVDAAFGGLVIPFMDNPYPFDFQNRGVSSITIDPHKMGMATIPAGGIIFRNESYL 235          

HSP 2 Score: 31.5722 bits (70), Expect = 7.534e-12
Identity = 17/60 (28.33%), Postives = 32/60 (53.33%), Query Frame = 3
Query:  465 TSSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARAPREGLENTGRFEILSKDVGRTLS 644
            T ++  + + + Y     LGFEG + +++NC+ N R   E + + G FE + + V   +S
Sbjct:  254 TGTRPGTGVASAYAVLKSLGFEGMREVVKNCLKNTRILVEEMRDLG-FEPVIEPVMNVVS 312          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_METHJ (L-tyrosine decarboxylase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=mfnA PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.782e-12
Identity = 35/93 (37.63%), Postives = 49/93 (52.69%), Query Frame = 2
Query:   77 YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL 355
            Y M    A EL+D+NT C+  + G+T  G  + +  L  L  ++         +HVDAA GG++ PFL     +DF +P V SI V  HK GL
Sbjct:  141 YRMKTDAAGELIDKNTCCIVGVAGTTEYGMTDPIPALGKLAEQEGVH------LHVDAAFGGYVLPFLDDAPPFDFSVPGVGSIAVDPHKMGL 227          

HSP 2 Score: 31.9574 bits (71), Expect = 9.782e-12
Identity = 17/55 (30.91%), Postives = 27/55 (49.09%), Query Frame = 3
Query:  465 TSSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARAPREGLENTGRFEILSKDV 629
            T ++  + + A Y     LG +G K ++  CM N R   EG+E  G    ++ DV
Sbjct:  262 TGTRPGASVAAAYAVMAYLGRKGMKALVTGCMENTRRMIEGMEAFGVHRKVTPDV 316          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_PYRKO (L-tyrosine decarboxylase OS=Pyrococcus kodakaraensis GN=mfnA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.268e-11
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 2
Query:   77 YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK 394
            Y +N     + + + TI +  I G+T  G  +D+  L DL         +  P+HVDAA GGF+ PF     Y   ++DFRL  VKSI +  HK G+V    G +++R K
Sbjct:  144 YTVNVKDVEKKITDRTIGIVGIAGTTGLGVVDDIPALSDLALD------YGLPLHVDAAFGGFVIPFAKALGYEIPDFDFRLKGVKSITIDPHKMGMVPIPAGGIIFREK 247          

HSP 2 Score: 25.409 bits (54), Expect = 1.268e-11
Identity = 11/36 (30.56%), Postives = 20/36 (55.56%), Query Frame = 3
Query:  465 TSSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNAR 572
            T ++  +  +A +     LGF+GYK +++  M  AR
Sbjct:  271 TGTRPGANALAVWAMIKHLGFDGYKEVVKEKMELAR 306          
The following BLAST results are available for this feature:
BLAST of DY260155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
DCEA_LISMO6.605e-3543.65Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCE_YEAST3.510e-3242.60Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
MFNA_METTP2.941e-1537.37L-tyrosine decarboxylase OS=Methanosaeta thermophi... [more]
MFNA_UNCMA3.107e-1432.77L-tyrosine decarboxylase OS=Uncultured methanogeni... [more]
MFNA_THEGJ1.570e-1236.36L-tyrosine decarboxylase OS=Thermococcus gammatole... [more]
MFNA_METLZ4.470e-1236.54L-tyrosine decarboxylase OS=Methanocorpusculum lab... [more]
MFNA_METKA4.606e-1236.08L-tyrosine decarboxylase OS=Methanopyrus kandleri ... [more]
MFNA_ARCFU7.534e-1230.28L-tyrosine decarboxylase OS=Archaeoglobus fulgidus... [more]
MFNA_METHJ9.782e-1237.63L-tyrosine decarboxylase OS=Methanospirillum hunga... [more]
MFNA_PYRKO1.268e-1135.45L-tyrosine decarboxylase OS=Pyrococcus kodakaraens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260155 ID=DY260155; Name=DY260155; organism=Citrus clementina; type=EST; length=1204bp
GTGCAGGTATGCCCTGGAGAAATTTGCGAGGTACTTTGAGGTTGAGCTGA
AGGAGGTGAAACTGGAAGAGGGATATTATGTGATGAATCCTGTGAAAGCT
GTTGAGTTGGTAGATGAGAACACCATTTGTGTTGCAGCCATTCTGGGATC
CACCTTGACGGGAGAATTTGAGGATGTTAAGCTTCTTCCTGACCTCCTCA
CCAAAAAGAATGAGGAGACCGGTTGGGACACCCCCATTCATGTTGATGCT
GCTAGCGGCGGATTTATTGCTCCTTTTCTCTATCCAGACCTTGAATGGGA
TTTCCGTTTGCCACTGGTGAAGAGCATTAATGTCAGTGGTCACAAGTACG
GCCTTGTATATGCAGGTGTTGGCTGGGTTGTCTGGAGGACCAAAGATGAC
TTGCCGGATGAACTTGTCTTTCACATCAACTACCTTGGATCTGATCAACC
GACTTTCACCCTCAACTTCCTCAAAAGGCTCCAGTCAAATAATTGCTCAA
TATTATCAGTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTATGGA
AAATTGCATGGGGAATGCTAGAGCGCCAAGAGAAGGATTAGAGAACACAG
GGCGCTTTGAAATTCTCTCCAAGGATGTTGGGCGTACCCTTAGTAGCCTT
TTCTTTTGAAGGACAGCCACCCCCCCCCCCGTGTTTGAGATATCCGAGGG
TTGGAAAAAGTTTGGGTGGATAGTTCCCGGCCTATACCATGCCCTGCCAT
GCCGAAAAATGTGGCCGTTCCTTCCCGGTGGTTGTCCCGGGAGGATTTCC
CCCCCCTACCCTGGTCGAAAAACCCCCCCCCCCCACCATCCAGGGAAGTT
TTGAAAGGAAATTGGACCCCCCTTCCCAATTCCGGGTTTCCCCCAAAAAC
CCCCCCCTGCTCCACCCCCCTGGCTCCACACAACCCCACGGGGGAAAAAC
CCACTTAAAAAAAAGGTGGGAAAAAAAACCTCTCGGGGGAAACTCCCCCC
CCGCCCTCGAAAAAAGGTTTCCAGAAAAGGGCCGGAAAAAACGGAGGAGC
CGGCGCGAGGTTCCCCCCCAACAAAAAAAAAAACAAAAAAATTTTTTCAT
TCGTCCTTTTTTTTAAAAATAAAAAAACCCTTTTGTCCTCCTCCCCCGCT
TTTCCCCCCAAATATCCTCCAACCCGCAGAGGGGGGGGCTCGCTTTCCCT
CCCC
back to top