DY260155

Overview
NameDY260155
Unique NameDY260155
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1204
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14126 contig Ccv1_Contig14126:105..1307. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_PYRFU (L-tyrosine decarboxylase OS=Pyrococcus furiosus GN=mfnA PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.648e-11
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 2
Query:   92 VKAVEL-VDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK 394
            VK VE  + ENTI +  I G+T  G  +D+  L DL         +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +  HK G+     G +V+R K
Sbjct:  149 VKDVEAKISENTIGIVGIAGTTGLGVVDDIPALSDLARD------YGIPLHVDAAFGGFVIPFAKELGYDLPDFDFKLKGVQSITIDPHKMGMAPIPAGGIVFRHK 248          

HSP 2 Score: 26.9498 bits (58), Expect = 1.648e-11
Identity = 13/45 (28.89%), Postives = 24/45 (53.33%), Query Frame = 3
Query:  465 TSSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARAPREGLENT 599
            T ++  + ++A +     LGFEGY  I++  M  +R   E ++ T
Sbjct:  272 TGTRPGASVLAVWALIKHLGFEGYMEIVDRAMKLSRWFAEEIKKT 316          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_METB6 (L-tyrosine decarboxylase OS=Methanoregula boonei (strain 6A8) GN=mfnA PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.780e-11
Identity = 40/114 (35.09%), Postives = 61/114 (53.51%), Query Frame = 2
Query:   95 KAVELVDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYL 436
            KA EL+D+NTIC+  + G+T  G  + +  L  +  ++      D  +HVDAA GG + PFL   + +DF LP V ++ V  HK G+     G ++ R + D+ D L     YL
Sbjct:  147 KAAELIDKNTICLVGVAGTTEYGMVDPIADLAKIAAQQ------DIFLHVDAAFGGMVIPFLPKPVPFDFALPGVTTLAVDPHKMGMSTIPAGVLLTR-EPDMLDALNIDTPYL 253          

HSP 2 Score: 25.0238 bits (53), Expect = 2.780e-11
Identity = 13/37 (35.14%), Postives = 16/37 (43.24%), Query Frame = 3
Query:  519 LGFEGYKNIMENCMGNARAPREGLENTGRFEILSKDV 629
            LG  G K ++  CM N      G+E  G     S DV
Sbjct:  280 LGISGMKAVVAGCMKNTERLIAGMETRGIQPAASPDV 316          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_PYRAB (L-tyrosine decarboxylase OS=Pyrococcus abyssi GN=mfnA PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.602e-11
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 2
Query:   92 VKAVEL-VDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK 394
            VK VE  + +NTI +  I G+T  G  +D+  L DL  +      +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +  HK G+     G +++R K
Sbjct:  150 VKDVEAKISDNTIGIVGIAGTTGLGVVDDIPALSDLARE------YGIPLHVDAAFGGFVIPFAKSLGYDLPDFDFKLKGVESITIDPHKMGMAPIPAGGIIFRRK 249          

HSP 2 Score: 26.1794 bits (56), Expect = 3.602e-11
Identity = 11/36 (30.56%), Postives = 20/36 (55.56%), Query Frame = 3
Query:  465 TSSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNAR 572
            T ++  + ++A +     LGFEGY+ I+   M  +R
Sbjct:  273 TGTRPGASVLAVWALIKHLGFEGYREIVRKAMELSR 308          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_PYRHO (L-tyrosine decarboxylase OS=Pyrococcus horikoshii GN=mfnA PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.602e-11
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 2
Query:  110 VDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK 394
            + +NTI +  I G+T  G  +D+  L DL         +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +  HK G+     G +V+R K
Sbjct:  156 ISDNTIGIVGIAGTTGLGVVDDIPALSDLARD------YGIPLHVDAAFGGFVIPFAKELGYELPDFDFKLKGVQSITIDPHKMGMAPIPAGGIVFRRK 248          

HSP 2 Score: 27.7202 bits (60), Expect = 3.602e-11
Identity = 13/36 (36.11%), Postives = 20/36 (55.56%), Query Frame = 3
Query:  465 TSSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNAR 572
            T ++  + +IA +     LGFEGY  I+E  M  +R
Sbjct:  272 TGTRPGASVIAVWALIKHLGFEGYMRIVERAMKLSR 307          
BLAST of DY260155 vs. ExPASy Swiss-Prot
Match: MFNA_METMJ (L-tyrosine decarboxylase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=mfnA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.684e-11
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 2
Query:  107 LVDENTICVAAILGSTLTGEFEDVKLLPDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD 397
            L+D NT+ +  ++G+T  G  + +  L ++   +N        +HVDAA GG + PFL   + +DF LP V SI+V  HK G+     G ++ R+ +
Sbjct:  151 LIDHNTVALVGVVGTTEYGMVDPISRLSEIALDRN------VFLHVDAAFGGMVVPFLDRPVPFDFSLPGVSSISVDPHKMGMSTIPAGCLLTRSAE 241          

HSP 2 Score: 28.8758 bits (63), Expect = 4.684e-11
Identity = 13/37 (35.14%), Postives = 20/37 (54.05%), Query Frame = 3
Query:  519 LGFEGYKNIMENCMGNARAPREGLENTGRFEILSKDV 629
            LG +G + ++  CM N R   EG+E  G    ++ DV
Sbjct:  280 LGMDGMRAVVAGCMENCRRLIEGMETLGYPRAVTPDV 316          
The following BLAST results are available for this feature:
BLAST of DY260155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
MFNA_PYRFU1.648e-1138.68L-tyrosine decarboxylase OS=Pyrococcus furiosus GN... [more]
MFNA_METB62.780e-1135.09L-tyrosine decarboxylase OS=Methanoregula boonei (... [more]
MFNA_PYRAB3.602e-1136.79L-tyrosine decarboxylase OS=Pyrococcus abyssi GN=m... [more]
MFNA_PYRHO3.602e-1136.36L-tyrosine decarboxylase OS=Pyrococcus horikoshii ... [more]
MFNA_METMJ4.684e-1132.99L-tyrosine decarboxylase OS=Methanoculleus marisni... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260155 ID=DY260155; Name=DY260155; organism=Citrus clementina; type=EST; length=1204bp
GTGCAGGTATGCCCTGGAGAAATTTGCGAGGTACTTTGAGGTTGAGCTGA
AGGAGGTGAAACTGGAAGAGGGATATTATGTGATGAATCCTGTGAAAGCT
GTTGAGTTGGTAGATGAGAACACCATTTGTGTTGCAGCCATTCTGGGATC
CACCTTGACGGGAGAATTTGAGGATGTTAAGCTTCTTCCTGACCTCCTCA
CCAAAAAGAATGAGGAGACCGGTTGGGACACCCCCATTCATGTTGATGCT
GCTAGCGGCGGATTTATTGCTCCTTTTCTCTATCCAGACCTTGAATGGGA
TTTCCGTTTGCCACTGGTGAAGAGCATTAATGTCAGTGGTCACAAGTACG
GCCTTGTATATGCAGGTGTTGGCTGGGTTGTCTGGAGGACCAAAGATGAC
TTGCCGGATGAACTTGTCTTTCACATCAACTACCTTGGATCTGATCAACC
GACTTTCACCCTCAACTTCCTCAAAAGGCTCCAGTCAAATAATTGCTCAA
TATTATCAGTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTATGGA
AAATTGCATGGGGAATGCTAGAGCGCCAAGAGAAGGATTAGAGAACACAG
GGCGCTTTGAAATTCTCTCCAAGGATGTTGGGCGTACCCTTAGTAGCCTT
TTCTTTTGAAGGACAGCCACCCCCCCCCCCGTGTTTGAGATATCCGAGGG
TTGGAAAAAGTTTGGGTGGATAGTTCCCGGCCTATACCATGCCCTGCCAT
GCCGAAAAATGTGGCCGTTCCTTCCCGGTGGTTGTCCCGGGAGGATTTCC
CCCCCCTACCCTGGTCGAAAAACCCCCCCCCCCCACCATCCAGGGAAGTT
TTGAAAGGAAATTGGACCCCCCTTCCCAATTCCGGGTTTCCCCCAAAAAC
CCCCCCCTGCTCCACCCCCCTGGCTCCACACAACCCCACGGGGGAAAAAC
CCACTTAAAAAAAAGGTGGGAAAAAAAACCTCTCGGGGGAAACTCCCCCC
CCGCCCTCGAAAAAAGGTTTCCAGAAAAGGGCCGGAAAAAACGGAGGAGC
CGGCGCGAGGTTCCCCCCCAACAAAAAAAAAAACAAAAAAATTTTTTCAT
TCGTCCTTTTTTTTAAAAATAAAAAAACCCTTTTGTCCTCCTCCCCCGCT
TTTCCCCCCAAATATCCTCCAACCCGCAGAGGGGGGGGCTCGCTTTCCCT
CCCC
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