DY260156

Overview
NameDY260156
Unique NameDY260156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_NOTVI (Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.758e-39
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPT VPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  347 CPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.758e-39
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKV RAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.758e-39
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHK DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKLDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.296e-39
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFKCGINYQ PTVVPG DLAKVQRAVCMISN+T+V EVFSRI+ KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKCGINYQAPTVVPGADLAKVQRAVCMISNSTSVVEVFSRINSKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.916e-39
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVV GGDLAKVQRAVCM+SN TAVAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  136 CPTGFKVGINYQPPTVVLGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 219          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.916e-39
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1
Query:  265 GFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            GFK GINYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  349 GFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 429          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.114e-39
Identity = 74/84 (88.10%), Postives = 81/84 (96.43%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFKCGINYQPPTVVP GDLAKV RAVCMISN+TA++EVFSRI+ KFDLMY+KRAFVHWYVGEGMEEGEF+EARED+AALEK
Sbjct:  347 CPTGFKCGINYQPPTVVPDGDLAKVDRAVCMISNSTAISEVFSRINKKFDLMYSKRAFVHWYVGEGMEEGEFNEAREDMAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA1B_PANTR (Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.679e-39
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKF LMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFVLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.724e-39
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPT VPGGDLAKV RAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.724e-39
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKV RAVCM+SN TA+AE +SR+D+KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEK
Sbjct:  345 CPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEK 428          
The following BLAST results are available for this feature:
BLAST of DY260156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA_NOTVI1.758e-3988.10Tubulin alpha chain OS=Notophthalmus viridescens P... [more]
TBA_HAECO1.758e-3989.29Tubulin alpha chain OS=Haemonchus contortus PE=2 S... [more]
TBA3_BOVIN1.758e-3989.29Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 ... [more]
TBA3_MAIZE2.296e-3991.67Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV... [more]
TBA_OCTVU3.916e-3990.48Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBA_EUPVA3.916e-3995.06Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]
TBAN_GUITH5.114e-3988.10Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBA1B_PANTR6.679e-3988.10Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1... [more]
TBA3_HOMAM8.724e-3986.90Tubulin alpha-3 chain OS=Homarus americanus PE=2 S... [more]
TBA2_CAEEL8.724e-3988.10Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260156 ID=DY260156; Name=DY260156; organism=Citrus clementina; type=EST; length=778bp
TTAAAATTCACCATTACCTATTTATCGAAGAACAATGCGTATGGATGACT
GCATTGTTTTTCCAACTTAATTTCAAATAAGTTGACATGGTTTATGGCTT
TTTTGATAATTTCTTGTGTAAATTGGGTAACAAGAGAGTATTCTTGTATG
TATAACCTCTTATTGAGGTTGCCAAAGCAACCTCAAGAATTTATATTACT
TGTTTGATGTGCAACATTATAACTACTCTAACATTTGTCTATTTGGAATT
ACAGGTGCCCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACT
GTTGTACCTGGAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGAT
CAGCAACAACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAAT
TCGATCTCATGTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAA
GGCATGGAGGAAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCT
TGAGAAAGATTATGAGGAAGTTGGTGCAGAAGGAGTTGATGATGAGGATG
ATGGTGAAGAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAG
AAATATGTACTTTTTGCAAGGGCATTTATGTGGAAATTTGTTGAGAAAAG
TGAGGGTCCTGTACTCAATGCCTAGTCCCCTGCCTTTTTATTGCTTTGTT
TCCTCCTGTACACTAATTCCTTTTGCTGTTGAACTCCCAAAATTGTGCCA
ATATTGTGATTTCTGGTGCTTCCAAGGG
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