DY260156

Overview
NameDY260156
Unique NameDY260156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.488e-38
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPG DLAKV RAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.943e-38
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVV GGDLAKVQR VCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  347 CPTGFKVGINYQPPTVVAGGDLAKVQRIVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDIAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.315e-38
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+ HKFDLMYAK AFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.385e-38
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTG K GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYV EGMEEGEF+EAREDLAALEK
Sbjct:  222 CPTGVKVGINYQPPTVVPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEK 305          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.165e-37
Identity = 70/84 (83.33%), Postives = 77/84 (91.67%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPP   PGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYV EGMEEGEF+EAREDLAALEK
Sbjct:  344 CPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEK 427          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.376e-36
Identity = 70/84 (83.33%), Postives = 76/84 (90.48%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPG DLAKV RAVCM+SN TA+AE ++R+DHK DLMYAKRAFVHWYVGEGMEE +FSEAREDLA LEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKVDLMYAKRAFVHWYVGEGMEERQFSEAREDLATLEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.052e-36
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK G+ YQPP  VP GDLAKV RAVCM+SN T++AE +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKLGVCYQPPQYVPNGDLAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.011e-35
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPP VVPGGDLA+VQRAVCM+SN TA+ E ++R+DHKFDLMYAK+AF+HWY+ EGME GEF EAREDLAALEK
Sbjct:  354 CPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDLAALEK 437          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.480e-35
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GI YQPP  VP GDLAKV RAVCM+SN TA++E +S +DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+
Sbjct:  347 CPTGFKIGICYQPPQQVPNGDLAKVNRAVCMLSNTTAISEAWSALDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 7.642e-35
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQ P  V GGDLAKV RAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHW+VGEGMEEGEF EAR+DLAALEK
Sbjct:  350 CPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEK 433          
The following BLAST results are available for this feature:
BLAST of DY260156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA1_HOMAM1.488e-3886.90Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]
TBA5_CHICK1.943e-3886.90Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA3E_HUMAN3.315e-3888.10Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBA4_CHICK7.385e-3885.71Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_CHICK8.165e-3783.33Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA2_HOMAM2.376e-3683.33Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA1_PNECA4.052e-3682.14Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBAL3_MOUSE2.011e-3579.76Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA1_EMENI4.480e-3580.95Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA8_CAEEL7.642e-3579.76Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260156 ID=DY260156; Name=DY260156; organism=Citrus clementina; type=EST; length=778bp
TTAAAATTCACCATTACCTATTTATCGAAGAACAATGCGTATGGATGACT
GCATTGTTTTTCCAACTTAATTTCAAATAAGTTGACATGGTTTATGGCTT
TTTTGATAATTTCTTGTGTAAATTGGGTAACAAGAGAGTATTCTTGTATG
TATAACCTCTTATTGAGGTTGCCAAAGCAACCTCAAGAATTTATATTACT
TGTTTGATGTGCAACATTATAACTACTCTAACATTTGTCTATTTGGAATT
ACAGGTGCCCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACT
GTTGTACCTGGAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGAT
CAGCAACAACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAAT
TCGATCTCATGTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAA
GGCATGGAGGAAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCT
TGAGAAAGATTATGAGGAAGTTGGTGCAGAAGGAGTTGATGATGAGGATG
ATGGTGAAGAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAG
AAATATGTACTTTTTGCAAGGGCATTTATGTGGAAATTTGTTGAGAAAAG
TGAGGGTCCTGTACTCAATGCCTAGTCCCCTGCCTTTTTATTGCTTTGTT
TCCTCCTGTACACTAATTCCTTTTGCTGTTGAACTCCCAAAATTGTGCCA
ATATTGTGATTTCTGGTGCTTCCAAGGG
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