DY260156

Overview
NameDY260156
Unique NameDY260156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.469e-26
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 1
Query:  259 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            P  FK G+N Q PTV+P  + A+V+R+  MISNNTA+++VF R++ KFDL+YAKRA+VH +V EGMEEGEF+EAREDLAALEK
Sbjct:  346 PCAFKIGVNSQKPTVLPDSEFAQVERSCAMISNNTAISQVFERMNDKFDLLYAKRAYVHHFVSEGMEEGEFAEAREDLAALEK 428          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.106e-25
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = 1
Query:  259 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 471
            PTGFK GI YQPPT+VP GDLAKV RA CM+SN TA++E ++ + HKFDL+Y+KRAFVHWYVGEGMEEGEF
Sbjct:  349 PTGFKIGICYQPPTMVPNGDLAKVNRA-CMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 504
            CP  FKCGIN QP T VPG   A   R+ CMI+N+TA+ +VF +++  FDLM+ KRAFVH YVGEGMEE EF++AR+DL  LE
Sbjct:  353 CPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYELE 435          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.927e-24
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1
Query:  259 PTGFKCGINYQPPTVVPG--GD-LAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGE 468
            PTGFKCGIN   PT V G  GD +A+ +++VCM+SN TA+++VFSRI+HKFDLMY KRAFVHWYVGEGMEEGE
Sbjct:  259 PTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.312e-15
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVH 435
            CPTGFK GIN + PTV+ G  +A+V RAVC +SN TA++E + R+++KFDLM++KRAFVH
Sbjct:  321 CPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVH 380          
The following BLAST results are available for this feature:
BLAST of DY260156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA6_NAEGR8.469e-2665.06Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA... [more]
TBA_AJECA1.106e-2574.65Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA1_ENTHI1.597e-2460.24Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA_DICPU7.927e-2471.23Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBA_ENCHE2.312e-1560.00Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260156 ID=DY260156; Name=DY260156; organism=Citrus clementina; type=EST; length=778bp
TTAAAATTCACCATTACCTATTTATCGAAGAACAATGCGTATGGATGACT
GCATTGTTTTTCCAACTTAATTTCAAATAAGTTGACATGGTTTATGGCTT
TTTTGATAATTTCTTGTGTAAATTGGGTAACAAGAGAGTATTCTTGTATG
TATAACCTCTTATTGAGGTTGCCAAAGCAACCTCAAGAATTTATATTACT
TGTTTGATGTGCAACATTATAACTACTCTAACATTTGTCTATTTGGAATT
ACAGGTGCCCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACT
GTTGTACCTGGAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGAT
CAGCAACAACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAAT
TCGATCTCATGTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAA
GGCATGGAGGAAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCT
TGAGAAAGATTATGAGGAAGTTGGTGCAGAAGGAGTTGATGATGAGGATG
ATGGTGAAGAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAG
AAATATGTACTTTTTGCAAGGGCATTTATGTGGAAATTTGTTGAGAAAAG
TGAGGGTCCTGTACTCAATGCCTAGTCCCCTGCCTTTTTATTGCTTTGTT
TCCTCCTGTACACTAATTCCTTTTGCTGTTGAACTCCCAAAATTGTGCCA
ATATTGTGATTTCTGGTGCTTCCAAGGG
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