DY260156

Overview
NameDY260156
Unique NameDY260156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.301e-42
Identity = 80/84 (95.24%), Postives = 84/84 (100.00%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+TA+AEVF+RIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.301e-42
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMY KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYTKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA1_VOLCA (Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.699e-42
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+TA+ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.699e-42
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+TA+ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.218e-42
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFKCGINYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.218e-42
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFKCGINYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.897e-42
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 1
Query:  259 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  348 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.897e-42
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 1
Query:  259 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  348 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.784e-42
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.784e-42
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 1
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
The following BLAST results are available for this feature:
BLAST of DY260156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA_EUGGR1.301e-4295.24Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE... [more]
TBA4_GOSHI1.301e-4296.43Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA1_VOLCA1.699e-4294.05Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN... [more]
TBA1_CHLRE1.699e-4294.05Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBA_TOXGO2.218e-4295.24Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBA_NEOCA2.218e-4295.24Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBA1_NAEGR2.897e-4297.59Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]
TBA13_NAEGR2.897e-4297.59Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA3_HORVU3.784e-4295.24Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]
TBA2_MAIZE3.784e-4295.24Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260156 ID=DY260156; Name=DY260156; organism=Citrus clementina; type=EST; length=778bp
TTAAAATTCACCATTACCTATTTATCGAAGAACAATGCGTATGGATGACT
GCATTGTTTTTCCAACTTAATTTCAAATAAGTTGACATGGTTTATGGCTT
TTTTGATAATTTCTTGTGTAAATTGGGTAACAAGAGAGTATTCTTGTATG
TATAACCTCTTATTGAGGTTGCCAAAGCAACCTCAAGAATTTATATTACT
TGTTTGATGTGCAACATTATAACTACTCTAACATTTGTCTATTTGGAATT
ACAGGTGCCCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACT
GTTGTACCTGGAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGAT
CAGCAACAACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAAT
TCGATCTCATGTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAA
GGCATGGAGGAAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCT
TGAGAAAGATTATGAGGAAGTTGGTGCAGAAGGAGTTGATGATGAGGATG
ATGGTGAAGAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAG
AAATATGTACTTTTTGCAAGGGCATTTATGTGGAAATTTGTTGAGAAAAG
TGAGGGTCCTGTACTCAATGCCTAGTCCCCTGCCTTTTTATTGCTTTGTT
TCCTCCTGTACACTAATTCCTTTTGCTGTTGAACTCCCAAAATTGTGCCA
ATATTGTGATTTCTGGTGCTTCCAAGGG
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