DY260156

Overview
NameDY260156
Unique NameDY260156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.712e-40
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFKCGINYQPPT VPGGDLA+VQRAVCM++N TA+AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL ALEK
Sbjct:  347 CPTGFKCGINYQPPTAVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLVALEK 430
[Close]
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.542e-40
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:   57 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 140
[Close]
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_LEPDS (Tubulin alpha chain OS=Lepidoglyphus destructor PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.542e-40
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.542e-40
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.542e-40
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.542e-40
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.542e-40
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.542e-40
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.542e-40
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  222 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 305
[Close]
BLAST of DY260156 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.542e-40
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:  256 CPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 507
            CPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  347 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
The following BLAST results are available for this feature:
BLAST of DY260156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA1_PELFA2.712e-4089.29Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA_LYTPI3.542e-4090.48Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
TBA_LEPDS3.542e-4090.48Tubulin alpha chain OS=Lepidoglyphus destructor PE... [more]
TBA_BOMMO3.542e-4090.48Tubulin alpha chain OS=Bombyx mori PE=2 SV=1[more]
TBAT_ONCMY3.542e-4090.48Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA8_RAT3.542e-4090.48Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE3.542e-4090.48Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN3.542e-4090.48Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]
TBA8_CHICK3.542e-4090.48Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA8_BOVIN3.542e-4090.48Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260156 ID=DY260156; Name=DY260156; organism=Citrus clementina; type=EST; length=778bp
TTAAAATTCACCATTACCTATTTATCGAAGAACAATGCGTATGGATGACT
GCATTGTTTTTCCAACTTAATTTCAAATAAGTTGACATGGTTTATGGCTT
TTTTGATAATTTCTTGTGTAAATTGGGTAACAAGAGAGTATTCTTGTATG
TATAACCTCTTATTGAGGTTGCCAAAGCAACCTCAAGAATTTATATTACT
TGTTTGATGTGCAACATTATAACTACTCTAACATTTGTCTATTTGGAATT
ACAGGTGCCCAACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACT
GTTGTACCTGGAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGAT
CAGCAACAACACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAAT
TCGATCTCATGTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAA
GGCATGGAGGAAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCT
TGAGAAAGATTATGAGGAAGTTGGTGCAGAAGGAGTTGATGATGAGGATG
ATGGTGAAGAATATTGATGTACTGCTTCTGCTGTAAACTATGAAGATGAG
AAATATGTACTTTTTGCAAGGGCATTTATGTGGAAATTTGTTGAGAAAAG
TGAGGGTCCTGTACTCAATGCCTAGTCCCCTGCCTTTTTATTGCTTTGTT
TCCTCCTGTACACTAATTCCTTTTGCTGTTGAACTCCCAAAATTGTGCCA
ATATTGTGATTTCTGGTGCTTCCAAGGG
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