DY260160

Overview
NameDY260160
Unique NameDY260160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length961
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.749e-62
Identity = 100/148 (67.57%), Postives = 128/148 (86.49%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 558
            ++  G +GL+ K E+WRVQYAL++IR AAR+LL LDEK+P+RIFEG ALLRR+H+ G +EES+NKLDY+L L V++F+ERRLQTLVFK+G+AKSIHHARVLI+ RHIRVG+QLVN+PSF+VRV+SQKH+  + TSP  GGRPGR  R+
Sbjct:   25 LKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARK 172          

HSP 2 Score: 46.2098 bits (108), Expect = 3.749e-62
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 2
Query:   53 NYGKTFKKPRRPYEKERLDAELRLVGDMG 139
            NY KT   PRRP+EKER+DAEL++VG+ G
Sbjct:    4 NYSKTSHTPRRPFEKERIDAELKVVGEFG 32          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9A_SCHPO (40S ribosomal protein S9-A OS=Schizosaccharomyces pombe GN=rps9a PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 6.371e-62
Identity = 102/150 (68.00%), Postives = 130/150 (86.67%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 564
            ++  G YGLR K E+WRV   LS+IR AAR+LLTLDEK+P+R+FEG A++RR+ R G L+E++ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:   28 LKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL 177          

HSP 2 Score: 42.3578 bits (98), Expect = 6.371e-62
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 2
Query:   50 RNYGKTFKKPRRPYEKERLDAELRLVGDMG 139
            R   KT+K PRRP+E  RLDAEL+L G+ G
Sbjct:    6 RKQSKTYKVPRRPFESARLDAELKLAGEYG 35          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9B_YEAST (40S ribosomal protein S9-B OS=Saccharomyces cerevisiae GN=RPS9B PE=1 SV=4)

HSP 1 Score: 209.149 bits (531), Expect = 1.180e-60
Identity = 100/149 (67.11%), Postives = 126/149 (84.56%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 561
            ++  G +GL+ KRE++R+ + LS+IR AARDLLT DEK+P+R+FEG AL+RR+ R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   28 LKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          

HSP 2 Score: 45.0542 bits (105), Expect = 1.180e-60
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 2
Query:   50 RNYGKTFKKPRRPYEKERLDAELRLVGDMG 139
            R Y KT+  P+RPYE  RLDAEL+L G+ G
Sbjct:    6 RTYSKTYSTPKRPYESSRLDAELKLAGEFG 35          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9A_YEAST (40S ribosomal protein S9-A OS=Saccharomyces cerevisiae GN=RPS9A PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 2.614e-60
Identity = 99/149 (66.44%), Postives = 126/149 (84.56%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 561
            ++  G +GL+ K+E++R+ + LS+IR AARDLLT DEK+P+R+FEG AL+RR+ R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   28 LKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          

HSP 2 Score: 45.0542 bits (105), Expect = 2.614e-60
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 2
Query:   50 RNYGKTFKKPRRPYEKERLDAELRLVGDMG 139
            R Y KT+  P+RPYE  RLDAEL+L G+ G
Sbjct:    6 RTYSKTYSTPKRPYESSRLDAELKLAGEFG 35          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_CAEEL (40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.616e-60
Identity = 99/146 (67.81%), Postives = 129/146 (88.36%), Query Frame = 1
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 564
            G +GL+ KRE+WRV+Y L+++R AAR+LLTL++K+P+R+FEG ALLRR+ + G L+E++ KLDYVL L VE+FLERRLQT VFK G+AKSIHHAR+LI+Q HIRV RQ+V++PSF+VR+DSQKHI+FSL SP+GGGRPGRVKRR +
Sbjct:   32 GTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTL 177          

HSP 2 Score: 40.4318 bits (93), Expect = 2.616e-60
Identity = 17/26 (65.38%), Postives = 20/26 (76.92%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            K  K PRRP+EKERLD EL+L+G  G
Sbjct:   10 KVTKSPRRPFEKERLDQELKLIGTFG 35          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_TRYBB (Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.143e-51
Identity = 95/147 (64.63%), Postives = 120/147 (81.63%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 555
            ++ CG+YGLRCKRE+WRV   LS++R  AR LLTL E +PRR+ EG A++RR H YG L+E ++KLDYVL+LTV + LERRLQT+VFK G+AKS+HH+RVLI+QRHI V +Q+V IPSF+VRV S+ HI F+  SPFG GRPGRVKR
Sbjct:   27 MKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPRRLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQRHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKR 173          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_NAEFO (40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.654e-50
Identity = 89/151 (58.94%), Postives = 118/151 (78.15%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS-LTSPFGGGRPGRVKRRNI 564
            ++ CG+YGL+ K+E+WR+QY L+R R  AR LLTL E + +R FEG ALLRRM R G L+ES+ +LDY+L+L  E+ LERRLQT+V K G++KSIHHAR LI QRHIRVG+Q VN+PSF+VRVDS+KHI  S  ++   GG+PGR+ R+ +
Sbjct:   30 LKMCGKYGLKNKQEIWRLQYYLARARKTARHLLTLPEDDMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGLSKSIHHARQLIFQRHIRVGKQTVNVPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKL 180          

HSP 2 Score: 39.2762 bits (90), Expect = 4.654e-50
Identity = 18/37 (48.65%), Postives = 23/37 (62.16%), Query Frame = 2
Query:   29 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGDMG 139
            MV    YR + K    PRRP+EKER+D EL++ G  G
Sbjct:    1 MVQNRCYRVHSKVSLPPRRPFEKERMDRELKMCGKYG 37          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_ENTHI (40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.073e-42
Identity = 77/146 (52.74%), Postives = 106/146 (72.60%), Query Frame = 1
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR-PGRVKRRN 561
            G++GL+ K+E+ RV Y L  +R  A+ +L  D K+P+R+ EG ALLRR+H  G L   QNKL++VLAL  EN LERRLQTLV++ G AKSIHHARVLIR + I+VG+Q+V++PSF+VRV+S+  I+ +  +P       GR KR+N
Sbjct:   32 GQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKN 177          

HSP 2 Score: 43.1282 bits (100), Expect = 1.073e-42
Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = 2
Query:   50 RNYGKTFKKPRRPYEKERLDAELRLVGDMG 139
            RN+  T+K P+ PYE+ER DAEL+LVG  G
Sbjct:    6 RNHSITYKTPKVPYERERFDAELKLVGQFG 35          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_PIG (40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.975e-39
Identity = 69/100 (69.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQ 426
            G YGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+A SIHH RVLIRQ
Sbjct:   31 GEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVLIRQ 130          

HSP 2 Score: 40.0466 bits (92), Expect = 3.975e-39
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            KT+  PRRP+EK RLD EL+L+G+ G
Sbjct:    9 KTYVTPRRPFEKSRLDQELKLIGEYG 34          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.453e-24
Identity = 62/143 (43.36%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGSL--------EESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG 528
            G YGL+ K ELW ++   ++ +  AR LLT    NP  I   G +LLRR+ +YG L        +E  N L+ VL LT+ ++LERRLQ  VF +G+AKS+HHAR+LI  R I +  Q+V++P F+VR D +  IE++  S +G
Sbjct:   30 GVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170          

HSP 2 Score: 28.4906 bits (62), Expect = 2.453e-24
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            K    PR P+EKERL  E +LVG  G
Sbjct:    8 KRASTPRDPFEKERLIREAQLVGVYG 33          
The following BLAST results are available for this feature:
BLAST of DY260160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS9_DICDI3.749e-6267.5740S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9A_SCHPO6.371e-6268.0040S ribosomal protein S9-A OS=Schizosaccharomyces ... [more]
RS9B_YEAST1.180e-6067.1140S ribosomal protein S9-B OS=Saccharomyces cerevi... [more]
RS9A_YEAST2.614e-6066.4440S ribosomal protein S9-A OS=Saccharomyces cerevi... [more]
RS9_CAEEL2.616e-6067.8140S ribosomal protein S9 OS=Caenorhabditis elegans... [more]
RS9_TRYBB2.143e-5164.63Probable 40S ribosomal protein S9 OS=Trypanosoma b... [more]
RS9_NAEFO4.654e-5058.9440S ribosomal protein S9 OS=Naegleria fowleri GN=R... [more]
RS9_ENTHI1.073e-4252.7440S ribosomal protein S9 OS=Entamoeba histolytica ... [more]
RS9_PIG3.975e-3969.0040S ribosomal protein S9 (Fragment) OS=Sus scrofa ... [more]
RS9_ENCCU2.453e-2443.3640S ribosomal protein S9 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260160 ID=DY260160; Name=DY260160; organism=Citrus clementina; type=EST; length=961bp
GTGAGGGTAGCACCTTCGGCGCGCAAAGATGGTGCACGTTTCATTCTACC
GCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAG
CGATTGGATGCTGAGTTGAGACTTGTGGGAGATATGGGCTTCGCTGCAAG
AGGGAACTCTGGAGGGTTCAATACGCACTGAGCCGCATCCGAAATGCTGC
GAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGACGTATTTTTGAGG
GTGAGGCCCTTCTCAGGAGGATGCACAGGTATGGCTCCTTGGAAGAGAGC
CAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGA
GCGTCGTCTTCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTC
ACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAG
CTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCACAT
TGAATTCTCACTCACAAGTCCATTTGGAGGCGGGCGCCCCGGAAGAGTGA
AGAGAAGGAACATTAAGGCTGCTGCCAAGAAGGCCCCCGGTGGAGATGGA
GATGAAGAGGATGAAGAATAAATTACCCTTGTGTGAGCAGATAGTTTTTT
TATGGTTACCGTAGGAACTCTGGCTGAACTTTGCAAATCGACTTATCCTC
CCCTAAGTTTTATGTTTTTGCCAATTTTCCTCCCATAATAGGAGGTTTTG
CTTGCTTTGTGCTTTTCAGAACACCCCCTTGAAAAGATTTGTTTTTGTTC
TTTTGGGAAGTAACCCTTTGACCCCTAAACTTTTTTTATGCCCAAAATTA
AAATCCCCCGGGTACTTAGCTTTTTTTGGGGCCCCTAAAAAATATAATCA
CAATTTAATGGAAAAATTTGCCCCCTCCCGGCATGGGCCAACCCCATACC
CATTGGAACCG
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