DY260160

Overview
NameDY260160
Unique NameDY260160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length961
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.079e-21
Identity = 55/146 (37.67%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 546
            VE    YGLR KRELW+ +  L + R   R LL    +   R   E  A++ R+ R+G L++  + LD +L+L + + LERRLQT V++ G+A +I  AR  I   HI+V  Q V +PS++V+   +  I++   SP    G P R
Sbjct:   27 VELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171          

HSP 2 Score: 28.1054 bits (61), Expect = 5.079e-21
Identity = 10/26 (38.46%), Postives = 18/26 (69.23%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            KT+ +PR+P+E +R+  E+ L+   G
Sbjct:    9 KTYDRPRKPWEADRMANEVELIKTYG 34          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.603e-21
Identity = 55/134 (41.04%), Postives = 78/134 (58.21%), Query Frame = 1
Query:  133 YGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGEA--LLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 525
            YGLR KRE+W+ Q  L + R AAR+LL L      + +FE +   L+  M R G L    + +D VLAL V   LERRLQTLV++ G+A+S   AR L+   HI +G + V +P ++V    +  I ++  SPF
Sbjct:   33 YGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165          

HSP 2 Score: 31.5722 bits (70), Expect = 6.603e-21
Identity = 12/26 (46.15%), Postives = 20/26 (76.92%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            K+++ P+RP+EK R++ E RLV + G
Sbjct:    9 KSYQTPKRPFEKTRIEEETRLVIEYG 34          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.691e-20
Identity = 55/146 (37.67%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  103 IGC*VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 540
            IG   E  G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L++    +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   23 IGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.691e-20
Identity = 53/138 (38.41%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 540
            G YGLR K+E+W  +  ++  R+ AR LL L      R    + LL ++++ G L+  Q+ +D +L L  E+ LERRLQT+V + G+A++I+ AR LI   HI VG + +  P ++V+ D +  I+F  TSPF    P
Sbjct:   31 GDYGLRNKKEIWLARTIVTGYRHMARSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSPFKNNPP 166          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.193e-19
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 1
Query:  133 YGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 555
            YGLR KRE+WR    L + R+ AR++L +     + P+ I   + L+  + RYG L      +D +L+L VE+ LERRLQT+V++ G+A+S   AR LI   HI +  Q V++PS++V +  +  I +  TS  G    G  +R
Sbjct:   33 YGLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEAPKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSLGDEANGERQR 175          

HSP 2 Score: 22.7126 bits (47), Expect = 1.193e-19
Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAE 115
            K +  P+R +EK R+++E
Sbjct:    9 KQYSSPKRRFEKSRIESE 26          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.268e-19
Identity = 57/132 (43.18%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 525
            +Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R+HR G L  +   LD VL+LTVE+ LERRLQTLV+K G+A++I  AR LI   HI V  Q++  P ++V  + +  I ++  SPF
Sbjct:   32 KYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.656e-19
Identity = 52/136 (38.24%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 525
            E  GRYGLR K+ELW+ +    R R+ AR LL L  +  R       L+  ++R G ++     +D VL +  E  LERRLQT+V+K G+AK+I+ AR L+   HI +  + V  P ++V  + +K I+++  SPF
Sbjct:   28 ELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_THEPD (30S ribosomal protein S4P OS=Thermofilum pendens (strain Hrk 5) GN=rps4p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.162e-19
Identity = 57/136 (41.91%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            ++  G YGLR KRELW  +  L  IR  AR LL L  +   RI   + L+ R+++ G L      LD VL+LTV + LERRLQT+V++ G+A +I HAR LI   HI V  + V  P ++V  D +  I +   SP
Sbjct:   27 MQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPAEE--RIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQLITHGHIAVNSRRVRSPGYLVSRDEENFISYYEGSP 160          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.162e-19
Identity = 55/146 (37.67%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  103 IGC*VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 540
            IG   E  G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   23 IGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.162e-19
Identity = 55/146 (37.67%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  103 IGC*VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 540
            IG   E  G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   23 IGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
The following BLAST results are available for this feature:
BLAST of DY260160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_METTP5.079e-2137.6730S ribosomal protein S4P OS=Methanosaeta thermoph... [more]
RS4_METB66.603e-2141.0430S ribosomal protein S4P OS=Methanoregula boonei ... [more]
RS4_SULSO5.691e-2037.6730S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_METS55.691e-2038.4130S ribosomal protein S4P OS=Metallosphaera sedula... [more]
RS4_METLZ1.193e-1937.5030S ribosomal protein S4P OS=Methanocorpusculum la... [more]
RS4_THEGJ1.268e-1943.1830S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS4_AERPE1.656e-1938.2430S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]
RS4_THEPD2.162e-1941.9130S ribosomal protein S4P OS=Thermofilum pendens (... [more]
RS4_SULIY2.162e-1937.6730S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIN2.162e-1937.6730S ribosomal protein S4P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260160 ID=DY260160; Name=DY260160; organism=Citrus clementina; type=EST; length=961bp
GTGAGGGTAGCACCTTCGGCGCGCAAAGATGGTGCACGTTTCATTCTACC
GCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAG
CGATTGGATGCTGAGTTGAGACTTGTGGGAGATATGGGCTTCGCTGCAAG
AGGGAACTCTGGAGGGTTCAATACGCACTGAGCCGCATCCGAAATGCTGC
GAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGACGTATTTTTGAGG
GTGAGGCCCTTCTCAGGAGGATGCACAGGTATGGCTCCTTGGAAGAGAGC
CAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGA
GCGTCGTCTTCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTC
ACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAG
CTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCACAT
TGAATTCTCACTCACAAGTCCATTTGGAGGCGGGCGCCCCGGAAGAGTGA
AGAGAAGGAACATTAAGGCTGCTGCCAAGAAGGCCCCCGGTGGAGATGGA
GATGAAGAGGATGAAGAATAAATTACCCTTGTGTGAGCAGATAGTTTTTT
TATGGTTACCGTAGGAACTCTGGCTGAACTTTGCAAATCGACTTATCCTC
CCCTAAGTTTTATGTTTTTGCCAATTTTCCTCCCATAATAGGAGGTTTTG
CTTGCTTTGTGCTTTTCAGAACACCCCCTTGAAAAGATTTGTTTTTGTTC
TTTTGGGAAGTAACCCTTTGACCCCTAAACTTTTTTTATGCCCAAAATTA
AAATCCCCCGGGTACTTAGCTTTTTTTGGGGCCCCTAAAAAATATAATCA
CAATTTAATGGAAAAATTTGCCCCCTCCCGGCATGGGCCAACCCCATACC
CATTGGAACCG
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