DY260160

Overview
NameDY260160
Unique NameDY260160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length961
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.817e-19
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 537
            +Y L+ K+ELW+ +  L   R  AR LL    K      E   LL+R+ R G L E  + LD VL+LT+++ LERRLQTLVFK G+A++I  AR LI   HI V  Q++  PS++V  + +  I +   SPF   +
Sbjct:   32 KYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.774e-19
Identity = 52/133 (39.10%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  133 YGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            YGLR KRE+W  + AL + R AAR+++ L     +  R   + + L+  + R G L E+ + +D VLAL VE  L+RRLQT V++ G A+S   AR  I   HI +G + V IP + V    Q+ I ++ +SP
Sbjct:   33 YGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164          

HSP 2 Score: 28.4906 bits (62), Expect = 5.774e-19
Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            K ++ P+RP+E  R++ E RLV + G
Sbjct:    9 KQYQTPKRPFELSRIEEETRLVIEYG 34          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.641e-18
Identity = 51/142 (35.92%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            V+    YGLR KRE+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG ++ S   +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   +P  +V  + + HI +  TSP
Sbjct:   27 VQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167          

HSP 2 Score: 26.5646 bits (57), Expect = 1.641e-18
Identity = 10/26 (38.46%), Postives = 19/26 (73.08%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            K+F+ PR P+++ R+ +E++LV   G
Sbjct:    9 KSFETPRHPWQEARMASEVQLVKAYG 34          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.831e-18
Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = 1
Query:  130 RYGLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            +YGLR KRELWR Q  L + R  ARDLL       ++      + + +++++++ G L E+   LD +L L+VE+FLERRLQT+V++ G+A++I  AR  I   HI V  + V  PSF+V  + +  I F   SP
Sbjct:   32 KYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.148e-18
Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 1
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLR---RMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 519
            G YGLR K+ELW  +  L  I++ AR++L+     P  I  GEA  R   R+ R G + +    LD VLAL V   LERRLQTLV++ GMA+SIH AR LI   HI +    V  P ++V  + +  I F+ TS
Sbjct:   33 GEYGLRNKKELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS 161          

HSP 2 Score: 25.409 bits (54), Expect = 2.148e-18
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 2
Query:   74 KPRRPYEKERLDAELRLVGDMG 139
            KP+R +  + L +ELRL+G+ G
Sbjct:   15 KPKRLWNSDLLMSELRLIGEYG 36          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.123e-18
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 1
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIE 504
            G YGLR KRELWR+ +   + R  AR LL   +    ++   E +++++   G L +    LD +L L+VE FLERRLQT+V++ G AKS + AR LI   HIRV  + +  PS++V+++ +  IE
Sbjct:   31 GYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.550e-17
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  133 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRV 549
            Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R++R G L  +   LD VL+LTVE+ LERRLQT+V++ G+A+++  AR LI   HI V  Q++  P ++V  + +  I ++  SPF   G P R+
Sbjct:   33 YALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSPFAKEGHPERM 169          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.766e-17
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 501
            ++  G YGLR K+ELW  +  L  I   AR LL++  +E+ P  +        ++++ G +E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR L+   H+ V  + V  P F+V  D +  I
Sbjct:   29 LQLVGEYGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155          

HSP 2 Score: 23.8682 bits (50), Expect = 1.766e-17
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 2
Query:   74 KPRRPYEKERLDAELRLVGDMG 139
            KP++ + K+ L  EL+LVG+ G
Sbjct:   15 KPKKIWNKQLLLEELQLVGEYG 36          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.889e-17
Identity = 50/123 (40.65%), Postives = 73/123 (59.35%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 477
            ++  G YGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ G +E+   +LD +L+L V   LERRLQT+V++ G+AKSIHHAR LI   H+ V  + V  P F+V
Sbjct:   29 LQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.691e-17
Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 477
            ++  G YGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ G +E+    LD +L+L V   LERRLQTLVF+ G+AKSIHHAR L+   H+ V  + V  P F+V
Sbjct:   29 LQLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147          
The following BLAST results are available for this feature:
BLAST of DY260160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_THESM4.817e-1941.1830S ribosomal protein S4P OS=Thermococcus sibiricu... [more]
RS4_METHJ5.774e-1939.1030S ribosomal protein S4P OS=Methanospirillum hung... [more]
RS4_METBF1.641e-1835.9230S ribosomal protein S4P OS=Methanosarcina barker... [more]
RS4_ARCFU1.831e-1840.0030S ribosomal protein S4P OS=Archaeoglobus fulgidu... [more]
RS4_CALMQ2.148e-1843.2830S ribosomal protein S4P OS=Caldivirga maquilinge... [more]
RS4_KORCO3.123e-1840.4830S ribosomal protein S4P OS=Korarchaeum cryptofil... [more]
RS4_PYRKO1.550e-1740.0030S ribosomal protein S4P OS=Pyrococcus kodakaraen... [more]
RS4_PYRIL1.766e-1737.4030S ribosomal protein S4P OS=Pyrobaculum islandicu... [more]
RS4_PYRAE5.889e-1740.6530S ribosomal protein S4P OS=Pyrobaculum aerophilu... [more]
RS4_PYRCJ7.691e-1741.4630S ribosomal protein S4P OS=Pyrobaculum calidifon... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260160 ID=DY260160; Name=DY260160; organism=Citrus clementina; type=EST; length=961bp
GTGAGGGTAGCACCTTCGGCGCGCAAAGATGGTGCACGTTTCATTCTACC
GCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAG
CGATTGGATGCTGAGTTGAGACTTGTGGGAGATATGGGCTTCGCTGCAAG
AGGGAACTCTGGAGGGTTCAATACGCACTGAGCCGCATCCGAAATGCTGC
GAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGACGTATTTTTGAGG
GTGAGGCCCTTCTCAGGAGGATGCACAGGTATGGCTCCTTGGAAGAGAGC
CAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGA
GCGTCGTCTTCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTC
ACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAG
CTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCACAT
TGAATTCTCACTCACAAGTCCATTTGGAGGCGGGCGCCCCGGAAGAGTGA
AGAGAAGGAACATTAAGGCTGCTGCCAAGAAGGCCCCCGGTGGAGATGGA
GATGAAGAGGATGAAGAATAAATTACCCTTGTGTGAGCAGATAGTTTTTT
TATGGTTACCGTAGGAACTCTGGCTGAACTTTGCAAATCGACTTATCCTC
CCCTAAGTTTTATGTTTTTGCCAATTTTCCTCCCATAATAGGAGGTTTTG
CTTGCTTTGTGCTTTTCAGAACACCCCCTTGAAAAGATTTGTTTTTGTTC
TTTTGGGAAGTAACCCTTTGACCCCTAAACTTTTTTTATGCCCAAAATTA
AAATCCCCCGGGTACTTAGCTTTTTTTGGGGCCCCTAAAAAATATAATCA
CAATTTAATGGAAAAATTTGCCCCCTCCCGGCATGGGCCAACCCCATACC
CATTGGAACCG
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