DY260160
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.817e-19 Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 1 Query: 130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 537 +Y L+ K+ELW+ + L R AR LL K E LL+R+ R G L E + LD VL+LT+++ LERRLQTLVFK G+A++I AR LI HI V Q++ PS++V + + I + SPF + Sbjct: 32 KYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 5.774e-19 Identity = 52/133 (39.10%), Postives = 77/133 (57.89%), Query Frame = 1 Query: 133 YGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 YGLR KRE+W + AL + R AAR+++ L + R + + L+ + R G L E+ + +D VLAL VE L+RRLQT V++ G A+S AR I HI +G + V IP + V Q+ I ++ +SP Sbjct: 33 YGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164 HSP 2 Score: 28.4906 bits (62), Expect = 5.774e-19 Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 2 Query: 62 KTFKKPRRPYEKERLDAELRLVGDMG 139 K ++ P+RP+E R++ E RLV + G Sbjct: 9 KQYQTPKRPFELSRIEEETRLVIEYG 34
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.641e-18 Identity = 51/142 (35.92%), Postives = 76/142 (53.52%), Query Frame = 1 Query: 115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 V+ YGLR KRE+W+ L R+ AR LL + R EG E +L ++ RYG ++ S +D +L+L EN LERRLQT V + G+A+++ AR I HI + + +P +V + + HI + TSP Sbjct: 27 VQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167 HSP 2 Score: 26.5646 bits (57), Expect = 1.641e-18 Identity = 10/26 (38.46%), Postives = 19/26 (73.08%), Query Frame = 2 Query: 62 KTFKKPRRPYEKERLDAELRLVGDMG 139 K+F+ PR P+++ R+ +E++LV G Sbjct: 9 KSFETPRHPWQEARMASEVQLVKAYG 34
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.831e-18 Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = 1 Query: 130 RYGLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 +YGLR KRELWR Q L + R ARDLL ++ + + +++++++ G L E+ LD +L L+VE+FLERRLQT+V++ G+A++I AR I HI V + V PSF+V + + I F SP Sbjct: 32 KYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 2.148e-18 Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 1 Query: 127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLR---RMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 519 G YGLR K+ELW + L I++ AR++L+ P I GEA R R+ R G + + LD VLAL V LERRLQTLV++ GMA+SIH AR LI HI + V P ++V + + I F+ TS Sbjct: 33 GEYGLRNKKELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS 161 HSP 2 Score: 25.409 bits (54), Expect = 2.148e-18 Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 2 Query: 74 KPRRPYEKERLDAELRLVGDMG 139 KP+R + + L +ELRL+G+ G Sbjct: 15 KPKRLWNSDLLMSELRLIGEYG 36
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 3.123e-18 Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 1 Query: 127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIE 504 G YGLR KRELWR+ + + R AR LL + ++ E +++++ G L + LD +L L+VE FLERRLQT+V++ G AKS + AR LI HIRV + + PS++V+++ + IE Sbjct: 31 GYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.550e-17 Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 133 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRV 549 Y L+ K+ELWR + L R AR LL K E + LL+R++R G L + LD VL+LTVE+ LERRLQT+V++ G+A+++ AR LI HI V Q++ P ++V + + I ++ SPF G P R+ Sbjct: 33 YALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSPFAKEGHPERM 169
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.766e-17 Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1 Query: 115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 501 ++ G YGLR K+ELW + L I AR LL++ +E+ P + ++++ G +E+ LD +L+L V LERRLQT+V++ G+AKSI+HAR L+ H+ V + V P F+V D + I Sbjct: 29 LQLVGEYGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155 HSP 2 Score: 23.8682 bits (50), Expect = 1.766e-17 Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 2 Query: 74 KPRRPYEKERLDAELRLVGDMG 139 KP++ + K+ L EL+LVG+ G Sbjct: 15 KPKKIWNKQLLLEELQLVGEYG 36
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.889e-17 Identity = 50/123 (40.65%), Postives = 73/123 (59.35%), Query Frame = 1 Query: 115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 477 ++ G YGLR K+ELW + L I AR LL T +E+ P + ++++ G +E+ +LD +L+L V LERRLQT+V++ G+AKSIHHAR LI H+ V + V P F+V Sbjct: 29 LQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 7.691e-17 Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 477 ++ G YGLR K+ELW + L I AR LL T +E+ P + ++++ G +E+ LD +L+L V LERRLQTLVF+ G+AKSIHHAR L+ H+ V + V P F+V Sbjct: 29 LQLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147 The following BLAST results are available for this feature:
BLAST of DY260160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260160 ID=DY260160; Name=DY260160; organism=Citrus clementina; type=EST; length=961bpback to top |