DY260160

Overview
NameDY260160
Unique NameDY260160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length961
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METMJ (30S ribosomal protein S4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.102e-16
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  133 YGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            YGLR KRELW+ Q  L + R  AR+L+ L          + + + L+  ++RYG + E+ +  D VLAL VE  L+RRLQTLV + G A+S   AR  I   HI +  + V IP +  RV+  +  E S   P
Sbjct:   33 YGLRNKRELWKAQSVLRKYRAGARELVALRSGGLSTEDYLKKRDQLVNHLYRYGLVGENADVGD-VLALKVEQQLDRRLQTLVLRRGFARSPKQARQFITHGHIAIKGRRVTIPGY--RVERAEEAEISYYGP 162          

HSP 2 Score: 27.7202 bits (60), Expect = 1.102e-16
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            K +  P+R +EK RL+ E RL+ D G
Sbjct:    9 KQYATPKRRFEKTRLEDEKRLIIDYG 34          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.312e-16
Identity = 52/135 (38.52%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            E   +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+V+K G+AK+   AR  I   HI V  + V  PS++V V     IE+   SP
Sbjct:   28 EISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSP 160          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.713e-16
Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            E   +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L ES+  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:   28 EISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_META3 (30S ribosomal protein S4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.865e-16
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            E   +YGL  K+E+W+++  L   R  AR L++       +  E   L   ++RYG L +    LD VL+L +E+ LERRLQTLVF+ G+A +   AR  I   HI V  + +N PS++V +  +  I +   SP
Sbjct:   28 ELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160          

HSP 2 Score: 22.3274 bits (46), Expect = 1.865e-16
Identity = 10/32 (31.25%), Postives = 14/32 (43.75%), Query Frame = 2
Query:   50 RNYGKTFKKPRRPYEKERLDAELRLVGDMGFA 145
            R   KT+  P  P+  ER+  E  L    G +
Sbjct:    5 RRLSKTYDTPNHPWIGERIKQERELSNKYGLS 36          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.238e-16
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS 510
            ++T G +GLR KRELW+    LSR+R+ AR LL L ++   R  +   L++ + R G L  S   LD VL LT  + L RRLQT+V K    K+ + AR  +   HI +G + V+IPS+ V V+ +  I F+
Sbjct:   27 LKTLGTFGLRTKRELWKAHTELSRVRHQARSLLALRQEV--RAEKEPILMKSLARIG-LVSSDATLDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFA 155          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.238e-16
Identity = 51/135 (37.78%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            E   +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD++L+L +E+ LERRLQTLV++ G+AK+   AR LI   HI V  + V  PS++V V     I +   SP
Sbjct:   28 EISHKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSYLVSVSENNAIGYVPNSP 160          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METTH (30S ribosomal protein S4P OS=Methanobacterium thermoautotrophicum GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.157e-16
Identity = 49/131 (37.40%), Postives = 78/131 (59.54%), Query Frame = 1
Query:  130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            +YGL+ K+E+W+ +  + R R  AR LL +  ++  +  E E LL  + R G L E   KL+ VL LTVE+ L RRLQTLV K G+A+++  AR ++   HI +  + ++ P ++V+   +  I F  +SP
Sbjct:   32 KYGLKNKKEVWKAETMVRRYRRDARYLLGMASEHTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSP 159          

HSP 2 Score: 23.0978 bits (48), Expect = 3.157e-16
Identity = 11/30 (36.67%), Postives = 14/30 (46.67%), Query Frame = 2
Query:   50 RNYGKTFKKPRRPYEKERLDAELRLVGDMG 139
            R   K +  P  P+  ER+  E RLV   G
Sbjct:    5 RKARKKYDTPPHPWNAERIKEENRLVAKYG 34          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.817e-16
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 477
            ++  G YGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ G +E+    LD VL+L V   LERRLQT+V++ G+AKSI+HAR LI   HI V  + V+ P F+V
Sbjct:   29 LQLMGEYGLRNKKELWLARAHLKWIVRRARSLLSMTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.103e-16
Identity = 51/130 (39.23%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 519
            RYGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:   32 RYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          

HSP 2 Score: 21.9422 bits (45), Expect = 4.103e-16
Identity = 9/26 (34.62%), Postives = 14/26 (53.85%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            K ++ P  PY+ ER+  E  L+   G
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYG 34          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.103e-16
Identity = 51/130 (39.23%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 519
            RYGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:   32 RYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          

HSP 2 Score: 21.9422 bits (45), Expect = 4.103e-16
Identity = 9/26 (34.62%), Postives = 14/26 (53.85%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            K ++ P  PY+ ER+  E  L+   G
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYG 34          
The following BLAST results are available for this feature:
BLAST of DY260160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_METMJ1.102e-1639.1030S ribosomal protein S4P OS=Methanoculleus marisn... [more]
RS4_METM71.312e-1638.5230S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METM51.713e-1637.7830S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_META31.865e-1636.3030S ribosomal protein S4P OS=Methanococcus aeolicu... [more]
RS4_NITMS2.238e-1640.1530S ribosomal protein S4P OS=Nitrosopumilus mariti... [more]
RS4_METVS2.238e-1637.7830S ribosomal protein S4P OS=Methanococcus vanniel... [more]
RS4_METTH3.157e-1637.4030S ribosomal protein S4P OS=Methanobacterium ther... [more]
RS4_THENV3.817e-1641.4630S ribosomal protein S4P OS=Thermoproteus neutrop... [more]
RS4_HALSA4.103e-1639.2330S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_HALS34.103e-1639.2330S ribosomal protein S4P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260160 ID=DY260160; Name=DY260160; organism=Citrus clementina; type=EST; length=961bp
GTGAGGGTAGCACCTTCGGCGCGCAAAGATGGTGCACGTTTCATTCTACC
GCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAG
CGATTGGATGCTGAGTTGAGACTTGTGGGAGATATGGGCTTCGCTGCAAG
AGGGAACTCTGGAGGGTTCAATACGCACTGAGCCGCATCCGAAATGCTGC
GAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGACGTATTTTTGAGG
GTGAGGCCCTTCTCAGGAGGATGCACAGGTATGGCTCCTTGGAAGAGAGC
CAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGA
GCGTCGTCTTCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTC
ACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAG
CTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCACAT
TGAATTCTCACTCACAAGTCCATTTGGAGGCGGGCGCCCCGGAAGAGTGA
AGAGAAGGAACATTAAGGCTGCTGCCAAGAAGGCCCCCGGTGGAGATGGA
GATGAAGAGGATGAAGAATAAATTACCCTTGTGTGAGCAGATAGTTTTTT
TATGGTTACCGTAGGAACTCTGGCTGAACTTTGCAAATCGACTTATCCTC
CCCTAAGTTTTATGTTTTTGCCAATTTTCCTCCCATAATAGGAGGTTTTG
CTTGCTTTGTGCTTTTCAGAACACCCCCTTGAAAAGATTTGTTTTTGTTC
TTTTGGGAAGTAACCCTTTGACCCCTAAACTTTTTTTATGCCCAAAATTA
AAATCCCCCGGGTACTTAGCTTTTTTTGGGGCCCCTAAAAAATATAATCA
CAATTTAATGGAAAAATTTGCCCCCTCCCGGCATGGGCCAACCCCATACC
CATTGGAACCG
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