DY260160
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METMJ (30S ribosomal protein S4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps4p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.102e-16 Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1 Query: 133 YGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 YGLR KRELW+ Q L + R AR+L+ L + + + L+ ++RYG + E+ + D VLAL VE L+RRLQTLV + G A+S AR I HI + + V IP + RV+ + E S P Sbjct: 33 YGLRNKRELWKAQSVLRKYRAGARELVALRSGGLSTEDYLKKRDQLVNHLYRYGLVGENADVGD-VLALKVEQQLDRRLQTLVLRRGFARSPKQARQFITHGHIAIKGRRVTIPGY--RVERAEEAEISYYGP 162 HSP 2 Score: 27.7202 bits (60), Expect = 1.102e-16 Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 2 Query: 62 KTFKKPRRPYEKERLDAELRLVGDMG 139 K + P+R +EK RL+ E RL+ D G Sbjct: 9 KQYATPKRRFEKTRLEDEKRLIIDYG 34
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.312e-16 Identity = 52/135 (38.52%), Postives = 75/135 (55.56%), Query Frame = 1 Query: 118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 E +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+V+K G+AK+ AR I HI V + V PS++V V IE+ SP Sbjct: 28 EISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSP 160
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.713e-16 Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 1 Query: 118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 E +YGL K+ELW+++ L R AR L++ + + E L + RY L ES+ LD+VL+L +E+ LERRLQT+V++ G+AK+ AR I HI V + V P+++V V IE+ SP Sbjct: 28 EISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_META3 (30S ribosomal protein S4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.865e-16 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 E +YGL K+E+W+++ L R AR L++ + E L ++RYG L + LD VL+L +E+ LERRLQTLVF+ G+A + AR I HI V + +N PS++V + + I + SP Sbjct: 28 ELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160 HSP 2 Score: 22.3274 bits (46), Expect = 1.865e-16 Identity = 10/32 (31.25%), Postives = 14/32 (43.75%), Query Frame = 2 Query: 50 RNYGKTFKKPRRPYEKERLDAELRLVGDMGFA 145 R KT+ P P+ ER+ E L G + Sbjct: 5 RRLSKTYDTPNHPWIGERIKQERELSNKYGLS 36
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.238e-16 Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 1 Query: 115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS 510 ++T G +GLR KRELW+ LSR+R+ AR LL L ++ R + L++ + R G L S LD VL LT + L RRLQT+V K K+ + AR + HI +G + V+IPS+ V V+ + I F+ Sbjct: 27 LKTLGTFGLRTKRELWKAHTELSRVRHQARSLLALRQEV--RAEKEPILMKSLARIG-LVSSDATLDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFA 155
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.238e-16 Identity = 51/135 (37.78%), Postives = 75/135 (55.56%), Query Frame = 1 Query: 118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 E +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD++L+L +E+ LERRLQTLV++ G+AK+ AR LI HI V + V PS++V V I + SP Sbjct: 28 EISHKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSYLVSVSENNAIGYVPNSP 160
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METTH (30S ribosomal protein S4P OS=Methanobacterium thermoautotrophicum GN=rps4p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.157e-16 Identity = 49/131 (37.40%), Postives = 78/131 (59.54%), Query Frame = 1 Query: 130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 +YGL+ K+E+W+ + + R R AR LL + ++ + E E LL + R G L E KL+ VL LTVE+ L RRLQTLV K G+A+++ AR ++ HI + + ++ P ++V+ + I F +SP Sbjct: 32 KYGLKNKKEVWKAETMVRRYRRDARYLLGMASEHTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSP 159 HSP 2 Score: 23.0978 bits (48), Expect = 3.157e-16 Identity = 11/30 (36.67%), Postives = 14/30 (46.67%), Query Frame = 2 Query: 50 RNYGKTFKKPRRPYEKERLDAELRLVGDMG 139 R K + P P+ ER+ E RLV G Sbjct: 5 RKARKKYDTPPHPWNAERIKEENRLVAKYG 34
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.817e-16 Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 1 Query: 115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 477 ++ G YGLR K+ELW + L I AR LL T +E+ P + ++++ G +E+ LD VL+L V LERRLQT+V++ G+AKSI+HAR LI HI V + V+ P F+V Sbjct: 29 LQLMGEYGLRNKKELWLARAHLKWIVRRARSLLSMTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 4.103e-16 Identity = 51/130 (39.23%), Postives = 69/130 (53.08%), Query Frame = 1 Query: 130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 519 RYGL+ K ELWR Q L R AR LL GE + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++ AR + H+ V V PS+ V V + + F TS Sbjct: 32 RYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155 HSP 2 Score: 21.9422 bits (45), Expect = 4.103e-16 Identity = 9/26 (34.62%), Postives = 14/26 (53.85%), Query Frame = 2 Query: 62 KTFKKPRRPYEKERLDAELRLVGDMG 139 K ++ P PY+ ER+ E L+ G Sbjct: 9 KFYETPNHPYQGERIAEESDLLSRYG 34
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 4.103e-16 Identity = 51/130 (39.23%), Postives = 69/130 (53.08%), Query Frame = 1 Query: 130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 519 RYGL+ K ELWR Q L R AR LL GE + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++ AR + H+ V V PS+ V V + + F TS Sbjct: 32 RYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155 HSP 2 Score: 21.9422 bits (45), Expect = 4.103e-16 Identity = 9/26 (34.62%), Postives = 14/26 (53.85%), Query Frame = 2 Query: 62 KTFKKPRRPYEKERLDAELRLVGDMG 139 K ++ P PY+ ER+ E L+ G Sbjct: 9 KFYETPNHPYQGERIAEESDLLSRYG 34 The following BLAST results are available for this feature:
BLAST of DY260160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260160 ID=DY260160; Name=DY260160; organism=Citrus clementina; type=EST; length=961bpback to top |