DY260160
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_PYRAR (30S ribosomal protein S4P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.985e-16 Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 477 ++ G YGLR KRELW + L I AR LL T +E+ P + ++++ G +E+ LD +L+L V LERRLQT+V++ G+AKSI+HAR LI HI + + V P F+V Sbjct: 29 LQLMGEYGLRNKRELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKAGFIEDPNVPLDRILSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVTSPGFLV 147
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.985e-16 Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 1 Query: 118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 E +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+VF+ G+AK+ AR I HI V + V P++++ V IE+ SP Sbjct: 28 EISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEYVSNSP 160
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METM6 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 6.511e-16 Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 1 Query: 118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 E +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+V++ G+AK+ AR I HI V + V P+++V V IE+ SP Sbjct: 28 EISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLDIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_HALWD (30S ribosomal protein S4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps4p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.170e-15 Identity = 53/134 (39.55%), Postives = 69/134 (51.49%), Query Frame = 1 Query: 127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE--GEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 GRYGL+ K ELWR Q L R AR L+ + + + E GE L R+ RYG L + + + VL L V + LERRLQT+V++ G+A + AR I HI V V PS +V I F SP Sbjct: 30 GRYGLKNKEELWRTQSELREYRREARRLIG-EAQGDVSVAEALGEEFLDRLRRYGILS-ADDDISKVLGLDVSDILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVEETEANAIAFDENSP 161 HSP 2 Score: 23.8682 bits (50), Expect = 1.170e-15 Identity = 10/26 (38.46%), Postives = 15/26 (57.69%), Query Frame = 2 Query: 62 KTFKKPRRPYEKERLDAELRLVGDMG 139 K ++ P PY+ ER+ E L+G G Sbjct: 8 KRYETPNHPYQGERIAQEGDLLGRYG 33
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_HALMA (30S ribosomal protein S4P OS=Haloarcula marismortui GN=rps4p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.171e-15 Identity = 52/127 (40.94%), Postives = 67/127 (52.76%), Query Frame = 1 Query: 127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 507 GRYGL+ K ELWR Q L R AR LL ++ E E L R+ RYG L E Q++LD VL+L V + LERRLQT+V++ G A + AR I HI + V P V + + F Sbjct: 30 GRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHET---ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHGHIVLDDARVTRPGMTVETAVESSVGF 152 HSP 2 Score: 24.2534 bits (51), Expect = 1.171e-15 Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 2 Query: 62 KTFKKPRRPYEKERLDAELRLVGDMG 139 K ++ P P++ ER+ E L+G G Sbjct: 8 KFYETPNHPFQGERIADEANLIGRYG 33
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.231e-15 Identity = 54/137 (39.42%), Postives = 75/137 (54.74%), Query Frame = 1 Query: 115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 525 + T G +GLR KRELW+ LSR+RN AR LL L ++ R + LLR + R G L LD VL L V + L RRLQT+V K + + AR + HI + ++V IPS+ V V+ + I+ + S F Sbjct: 27 LRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIG-LVGKDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEEGDIKLTGGSAF 160
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METBU (30S ribosomal protein S4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps4p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 9.402e-15 Identity = 51/139 (36.69%), Postives = 74/139 (53.24%), Query Frame = 1 Query: 115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNP---RRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 VE +YGLR KRELW+ L R R AR LL ++ E + LL ++ R+ L+ N +D VL L E LERRLQT V + G+A++ AR I HI + + V +P +V + + ++E+ TSP Sbjct: 27 VELVKKYGLRNKRELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEADQLLTKLIRFSILKSDSN-IDDVLGLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTVPGMMVTREQEMNVEYYGTSP 164
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.604e-14 Identity = 51/132 (38.64%), Postives = 71/132 (53.79%), Query Frame = 1 Query: 130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 RYGL K ELWR Q L R AR L+ + + E G L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+ + AR I H+ V V+ PS+ V V + IEF TSP Sbjct: 31 RYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSP 161
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.095e-14 Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = 1 Query: 133 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 YGL+ KRELW + + R AR L E E L ++ + G L E+ +LD VL LTV++ LERRLQT++ + G+AK++ AR I HI V ++V+ PS++V+ + + IEF SP Sbjct: 30 YGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METAC (30S ribosomal protein S4P OS=Methanosarcina acetivorans GN=rps4p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.095e-14 Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 1 Query: 115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 V+ YGLR K+E+W+ L R+ AR LL EG E +L ++ RYG ++ N +D +L+L EN LERRLQT V + G+A+++ AR I HI + + IP +V + + HI + SP Sbjct: 27 VQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGNSP 167 The following BLAST results are available for this feature:
BLAST of DY260160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260160 ID=DY260160; Name=DY260160; organism=Citrus clementina; type=EST; length=961bpback to top |