DY260160

Overview
NameDY260160
Unique NameDY260160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length961
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_PYRAR (30S ribosomal protein S4P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.985e-16
Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 477
            ++  G YGLR KRELW  +  L  I   AR LL  T +E+ P  +        ++++ G +E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR LI   HI +  + V  P F+V
Sbjct:   29 LQLMGEYGLRNKRELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKAGFIEDPNVPLDRILSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVTSPGFLV 147          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.985e-16
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            E   +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+VF+ G+AK+   AR  I   HI V  + V  P++++ V     IE+   SP
Sbjct:   28 EISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEYVSNSP 160          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METM6 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.511e-16
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  118 ETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            E   +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:   28 EISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLDIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_HALWD (30S ribosomal protein S4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.170e-15
Identity = 53/134 (39.55%), Postives = 69/134 (51.49%), Query Frame = 1
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE--GEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            GRYGL+ K ELWR Q  L   R  AR L+  + +    + E  GE  L R+ RYG L  + + +  VL L V + LERRLQT+V++ G+A +   AR  I   HI V    V  PS +V       I F   SP
Sbjct:   30 GRYGLKNKEELWRTQSELREYRREARRLIG-EAQGDVSVAEALGEEFLDRLRRYGILS-ADDDISKVLGLDVSDILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVEETEANAIAFDENSP 161          

HSP 2 Score: 23.8682 bits (50), Expect = 1.170e-15
Identity = 10/26 (38.46%), Postives = 15/26 (57.69%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            K ++ P  PY+ ER+  E  L+G  G
Sbjct:    8 KRYETPNHPYQGERIAQEGDLLGRYG 33          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_HALMA (30S ribosomal protein S4P OS=Haloarcula marismortui GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.171e-15
Identity = 52/127 (40.94%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 507
            GRYGL+ K ELWR Q  L   R  AR LL    ++     E E  L R+ RYG L E Q++LD VL+L V + LERRLQT+V++ G A +   AR  I   HI +    V  P   V    +  + F
Sbjct:   30 GRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHET---ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHGHIVLDDARVTRPGMTVETAVESSVGF 152          

HSP 2 Score: 24.2534 bits (51), Expect = 1.171e-15
Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 2
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            K ++ P  P++ ER+  E  L+G  G
Sbjct:    8 KFYETPNHPFQGERIADEANLIGRYG 33          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.231e-15
Identity = 54/137 (39.42%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 525
            + T G +GLR KRELW+    LSR+RN AR LL L ++   R  +   LLR + R G L      LD VL L V + L RRLQT+V K     + + AR  +   HI +  ++V IPS+ V V+ +  I+ +  S F
Sbjct:   27 LRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIG-LVGKDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEEGDIKLTGGSAF 160          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METBU (30S ribosomal protein S4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.402e-15
Identity = 51/139 (36.69%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNP---RRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            VE   +YGLR KRELW+    L R R  AR LL    ++        E + LL ++ R+  L+   N +D VL L  E  LERRLQT V + G+A++   AR  I   HI +  + V +P  +V  + + ++E+  TSP
Sbjct:   27 VELVKKYGLRNKRELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEADQLLTKLIRFSILKSDSN-IDDVLGLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTVPGMMVTREQEMNVEYYGTSP 164          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.604e-14
Identity = 51/132 (38.64%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            RYGL  K ELWR Q  L   R  AR L+   + +     E G   L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+  +   AR  I   H+ V    V+ PS+ V V  +  IEF  TSP
Sbjct:   31 RYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSP 161          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.095e-14
Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  133 YGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            YGL+ KRELW  +    + R  AR L            E E  L ++ + G L E+  +LD VL LTV++ LERRLQT++ + G+AK++  AR  I   HI V  ++V+ PS++V+ + +  IEF   SP
Sbjct:   30 YGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158          
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METAC (30S ribosomal protein S4P OS=Methanosarcina acetivorans GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.095e-14
Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522
            V+    YGLR K+E+W+    L   R+ AR LL           EG      E +L ++ RYG ++   N +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   IP  +V  + + HI +   SP
Sbjct:   27 VQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGNSP 167          
The following BLAST results are available for this feature:
BLAST of DY260160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_PYRAR4.985e-1640.6530S ribosomal protein S4P OS=Pyrobaculum arsenatic... [more]
RS4_METMP4.985e-1637.0430S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METM66.511e-1637.0430S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_HALWD1.170e-1539.5530S ribosomal protein S4P OS=Haloquadratum walsbyi... [more]
RS4_HALMA1.171e-1540.9430S ribosomal protein S4P OS=Haloarcula marismortu... [more]
RS4_CENSY3.231e-1539.4230S ribosomal protein S4P OS=Cenarchaeum symbiosum... [more]
RS4_METBU9.402e-1536.6930S ribosomal protein S4P OS=Methanococcoides burt... [more]
RS4_NATPD1.604e-1438.6430S ribosomal protein S4P OS=Natronomonas pharaoni... [more]
RS4_NANEQ2.095e-1438.4630S ribosomal protein S4P OS=Nanoarchaeum equitans... [more]
RS4_METAC2.095e-1434.5130S ribosomal protein S4P OS=Methanosarcina acetiv... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260160 ID=DY260160; Name=DY260160; organism=Citrus clementina; type=EST; length=961bp
GTGAGGGTAGCACCTTCGGCGCGCAAAGATGGTGCACGTTTCATTCTACC
GCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAG
CGATTGGATGCTGAGTTGAGACTTGTGGGAGATATGGGCTTCGCTGCAAG
AGGGAACTCTGGAGGGTTCAATACGCACTGAGCCGCATCCGAAATGCTGC
GAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGACGTATTTTTGAGG
GTGAGGCCCTTCTCAGGAGGATGCACAGGTATGGCTCCTTGGAAGAGAGC
CAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGA
GCGTCGTCTTCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTC
ACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAG
CTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCACAT
TGAATTCTCACTCACAAGTCCATTTGGAGGCGGGCGCCCCGGAAGAGTGA
AGAGAAGGAACATTAAGGCTGCTGCCAAGAAGGCCCCCGGTGGAGATGGA
GATGAAGAGGATGAAGAATAAATTACCCTTGTGTGAGCAGATAGTTTTTT
TATGGTTACCGTAGGAACTCTGGCTGAACTTTGCAAATCGACTTATCCTC
CCCTAAGTTTTATGTTTTTGCCAATTTTCCTCCCATAATAGGAGGTTTTG
CTTGCTTTGTGCTTTTCAGAACACCCCCTTGAAAAGATTTGTTTTTGTTC
TTTTGGGAAGTAACCCTTTGACCCCTAAACTTTTTTTATGCCCAAAATTA
AAATCCCCCGGGTACTTAGCTTTTTTTGGGGCCCCTAAAAAATATAATCA
CAATTTAATGGAAAAATTTGCCCCCTCCCGGCATGGGCCAACCCCATACC
CATTGGAACCG
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