DY260160
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METMA (30S ribosomal protein S4P OS=Methanosarcina mazei GN=rps4p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.666e-14 Identity = 49/150 (32.67%), Postives = 76/150 (50.67%), Query Frame = 1 Query: 94 EGAIGC*VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTL-------DEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 E + V+ YGLR K+E+W+ L R+ AR LL E + E +L ++ RYG ++ N +D +L+L EN LERRLQT V + G+A+++ AR I HI + + IP +V + + HI + +SP Sbjct: 20 EARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSEEILSKLIRYGIIKADAN-VDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.773e-13 Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 1 Query: 130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 +YGL+ K+E+W+ + R AR LL D + E LL + R G L E L+ VL LTVE+ L RRLQT+V+K G+A++ AR+ + HI + + +N PS+VV + I F +SP Sbjct: 32 KYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.501e-12 Identity = 43/126 (34.13%), Postives = 73/126 (57.94%), Query Frame = 1 Query: 130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 507 +YGL+ K+E+W+ + + R R AR +L +D R + + LL + R G + + KL+ VL L VE+ L RRLQ+LVFK G++ + AR+ + HI + + +N P +V +++I+F Sbjct: 32 KYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.960e-12 Identity = 42/136 (30.88%), Postives = 77/136 (56.62%), Query Frame = 1 Query: 130 RYGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 522 +YGLR K+ +W+ L + R+ AR LL + ++ I + + +++++ G L+E KL+ VLAL V++ +ERRLQT++++ G A SI AR I HI + + + +P ++V + + + + SP Sbjct: 32 KYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166 The following BLAST results are available for this feature:
BLAST of DY260160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260160 ID=DY260160; Name=DY260160; organism=Citrus clementina; type=EST; length=961bpback to top |