DY260171

Overview
NameDY260171
Unique NameDY260171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1026
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260171_ssr587 microsatellite DY260171_ssr587:587..598. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 5.080e-30
Identity = 76/151 (50.33%), Postives = 90/151 (59.60%), Query Frame = 3
Query:   57 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            R  NV DP+S+D W   D F +       S A       N R+DWKETP AHVF ADLPG+R          G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT            AI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.915e-26
Identity = 60/134 (44.78%), Postives = 86/134 (64.18%), Query Frame = 3
Query:   51 GGRRTNVFDPVSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 446
            GG      +PVS+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF AD+PG+R           ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.096e-24
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 3
Query:  177 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 446
            AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.096e-24
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  171 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 446
            ++AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.856e-23
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  153 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 443
            R+TS   + AR+DWKET + H    D+PGL+            +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.985e-22
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  279 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT            AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.482e-21
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 3
Query:   69 VFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 446
            +FD ++ D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+ADLP G++          G +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.615e-18
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  156 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 443
            + +  + AR+DW+ET  AH    D+PG+R           R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.461e-18
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 3
Query:  138 APSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 446
            A ++A E +  A AR DWKETP+AHV   D+PG+R            R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.215e-15
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  135 NAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 446
            NAPS    R+    A    D KE P ++VF  D+PGL+            +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of DY260171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ5.080e-3050.3316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ9.915e-2644.7818.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN1.096e-2456.6722.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA1.096e-2454.3522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH7.856e-2351.0222.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN2.985e-2272.97Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ1.482e-2144.0917.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ2.615e-1846.0023.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ4.461e-1845.0521.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE1.215e-1541.5117.3 kDa class II heat shock protein OS=Solanum pe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YI19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260171 ID=DY260171; Name=DY260171; organism=Citrus clementina; type=EST; length=1026bp
TTTAATTAGCCCCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTC
GGTGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGA
TCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGG
CTAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACT
CCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGA
AGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGA
GGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGG
AGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGT
GGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTCACCGTTC
CTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGC
TAAGTGATAACTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAATA
AATTTGGTACGAAAGCAAAGCCCCTGTGTGTTTGTATGTGTGTGTGTGTT
TGTTTTCTTCCCTTCCCCCTGTTTAATTTGATGTGATTATGTTTGTGTGT
TTGCAAGAGCTTCAGGAGCCAGTCCTCAGCGTTGTAACTAGTTTTTTAAA
TGATAAAAAAGTGTGATGCCATAAAAAAAAAAAAAAAAAAAAACCCCAAC
TTTCCTTGGACAAGTTGGGCCTTAAAAAAAACATTGCCTTACCATTTTGT
CGCCACCAACAGGTCCCCTATCCAGTCAAAAAAAAATCCTTTATTTCCCA
TCCCGCCCAAAATCCCCCTAAAGTGGAGTCCGTAATTAACAGGGTCCAAA
CCTGTTTCCCCGGAGACTCCCCGGCCCGCGGTTCCCAAATCCTCCAAATG
TTACCATTGCCCAAAAAATAAAAAATATACCCTCCATGTTAAAAAAAAAA
ATCCCTCCCGACCACCCAACGGGAAA
back to top