DY260171

Overview
NameDY260171
Unique NameDY260171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1026
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260171_ssr587 microsatellite DY260171_ssr587:587..598. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.626e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  135 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 446
            N PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   30 NNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.257e-12
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 3
Query:   57 RRTNVFDPVS----LDVWDPFDGFLSSALTNAPSSARETSQFANA-RIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 446
            +RT  +DP      L  WDPF+      L N P  A      A     + +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVLT+T
Sbjct:   15 QRTREWDPFQQMQELMNWDPFE------LANHPWFANRQGPPAFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.257e-12
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  171 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 446
            A   +DW+ETP AHVF+ DLPGL           G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.801e-12
Identity = 44/119 (36.97%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  105 FDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 443
            F G     L   P      S  A A +DW ETP +HV + ++PGL           G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of DY260171 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.390e-11
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  135 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 446
            N PS    R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
The following BLAST results are available for this feature:
BLAST of DY260171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS177_ARATH9.626e-1338.3217.7 kDa class II heat shock protein OS=Arabidopsi... [more]
SP21_STIAU1.257e-1234.07Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HS178_ORYSJ1.257e-1238.7417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP16_ORYSJ2.801e-1236.9716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS176_ARATH1.390e-1136.4517.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260171 ID=DY260171; Name=DY260171; organism=Citrus clementina; type=EST; length=1026bp
TTTAATTAGCCCCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTC
GGTGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGA
TCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGG
CTAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACT
CCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGA
AGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGA
GGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGG
AGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGT
GGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTCACCGTTC
CTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGC
TAAGTGATAACTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAATA
AATTTGGTACGAAAGCAAAGCCCCTGTGTGTTTGTATGTGTGTGTGTGTT
TGTTTTCTTCCCTTCCCCCTGTTTAATTTGATGTGATTATGTTTGTGTGT
TTGCAAGAGCTTCAGGAGCCAGTCCTCAGCGTTGTAACTAGTTTTTTAAA
TGATAAAAAAGTGTGATGCCATAAAAAAAAAAAAAAAAAAAAACCCCAAC
TTTCCTTGGACAAGTTGGGCCTTAAAAAAAACATTGCCTTACCATTTTGT
CGCCACCAACAGGTCCCCTATCCAGTCAAAAAAAAATCCTTTATTTCCCA
TCCCGCCCAAAATCCCCCTAAAGTGGAGTCCGTAATTAACAGGGTCCAAA
CCTGTTTCCCCGGAGACTCCCCGGCCCGCGGTTCCCAAATCCTCCAAATG
TTACCATTGCCCAAAAAATAAAAAATATACCCTCCATGTTAAAAAAAAAA
ATCCCTCCCGACCACCCAACGGGAAA
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