DY260176

Overview
NameDY260176
Unique NameDY260176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14665 contig Ccv1_Contig14665:3..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_ASPNG (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger GN=sodC PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.619e-32
Identity = 73/151 (48.34%), Postives = 89/151 (58.94%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAV+ G   V GTV+F Q  +  PTT+S +++G       GFHVH  GD TNGC S GPHFNP GK HG PED+ RH              A  +  D  +   G  S++GR +VV    DDLG+GG+E SK TGNAG R AC +IG
Sbjct:    1 MVKAVAVIRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_ASPNC (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sodC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.619e-32
Identity = 73/151 (48.34%), Postives = 89/151 (58.94%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAV+ G   V GTV+F Q  +  PTT+S +++G       GFHVH  GD TNGC S GPHFNP GK HG PED+ RH              A  +  D  +   G  S++GR +VV    DDLG+GG+E SK TGNAG R AC +IG
Sbjct:    1 MVKAVAVIRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPFGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_BOTFU (Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckeliana GN=sod1 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 4.468e-32
Identity = 75/151 (49.67%), Postives = 90/151 (59.60%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVA + G   + GTV+F Q E + PTT++ +++G       G HVH  GD TNGC S GPHFNP G+ HG P DE RH              AT +V D+ I   GP S+IGR VVV    DDLGKG +E SK TGNAG R AC +IG
Sbjct:    1 MVKAVATVRGDSKISGTVTFEQSEENSPTTITWNITGNDANAERGMHVHQFGDNTNGCTSAGPHFNPHGQTHGAPTDEVRHVGDLGNFKTDAQGNATGSVQDSHIKLIGPLSVIGRTVVVHSGTDDLGKGENEESKKTGNAGTRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_YARLI (Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytica GN=SOD1 PE=3 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 5.835e-32
Identity = 75/151 (49.67%), Postives = 86/151 (56.95%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAVL G   V GTV+F Q+ + GP TV+  + G  P    GFHVH  GD TNGC S GPHFNP  K HG P D  RH              A   + D+ +   G NSI+GR VV+    DDLGKGGH  S  TGNAG R AC +IG
Sbjct:    1 MVKAVAVLRGDSKVSGTVTFEQDSESGPVTVTYDIKGNDPNAERGFHVHEFGDNTNGCTSAGPHFNPFKKNHGGPTDSERHVGDLGNVKTDSEGVAKGVLKDSLLKLTGDNSIVGRTVVIHGGEDDLGKGGHADSLKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_HUMLT (Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.621e-32
Identity = 74/151 (49.01%), Postives = 88/151 (58.28%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAVL G   + GTV+F Q  +  PTTVS +++G  P    G H+H  GD TNGC S GPH+NP  K HG P DE RH              A  +V D  I   G  SI+GR +VV    DDLG+GG+E SK TGNAG R AC +IG
Sbjct:    1 MVKAVAVLRGDSKITGTVTFEQANESAPTTVSWNITGHDPNAERGMHIHQFGDNTNGCTSAGPHYNPFKKTHGAPTDEVRHVGDLGNIKTDAEGNAVGSVQDKLIKVIGAESILGRTIVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_YEAST (Superoxide dismutase [Cu-Zn] OS=Saccharomyces cerevisiae GN=SOD1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.300e-31
Identity = 74/151 (49.01%), Postives = 87/151 (57.62%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MV+AVAVL G  GV G V F Q  +  PTTVS  ++G  P    GFH+H  GD TNGC+S GPHFNP  K HG P DE RH              A  +  D+ I   GP S++GR+VV+    DDLGKG  E S  TGNAG R AC +IG
Sbjct:    1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.698e-31
Identity = 70/149 (46.98%), Postives = 86/149 (57.72%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +KAV VL G   V G + F Q+ +G P  + G + GL  G HGFHVH  GD T GC + G HFNP  K+HG P+DE RH              A   + D+ I   G +SIIGR +VV    DDLGKGG+E S  TGNAG R+AC +IG
Sbjct:    3 LKAVCVLKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_EMENI (Superoxide dismutase [Cu-Zn] OS=Emericella nidulans GN=sodA PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.698e-31
Identity = 74/151 (49.01%), Postives = 87/151 (57.62%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDGP-TTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAVL G   V GTV+F Q  +   TTVS +++G  P    GFH+H  GD TNGC S GPHFNP GK HG PEDE RH              +  +  D  I   G  S++GR +VV    DDLG+G  E SK TGNAG R AC +IG
Sbjct:    1 MVKAVAVLRGDSKVSGTVTFEQADENSNTTVSWNITGNDPNAERGFHIHQFGDNTNGCTSAGPHFNPFGKTHGAPEDEVRHVGDLGNFKTDAEGNSKGSKTDKLIKLIGAESVLGRTLVVHAGTDDLGRGDSEESKKTGNAGARPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC4_DICDI (Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium discoideum GN=sodD PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.698e-31
Identity = 77/150 (51.33%), Postives = 92/150 (61.33%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRH-AXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRII 508
            MVKA+ V+ G   V GT+ FSQE +G P  V+G++SGL  G HGFH+H  GDT+NGC+S G HFNP   EHG P    RH               A   + DN I  FG  SIIGR +VV  + DDLG GG+ LSKTTGNAG RVAC I+
Sbjct:    1 MVKAICVVKGAV-VNGTIIFSQENEGSPVYVNGTISGLSGGLHGFHIHEFGDTSNGCLSAGAHFNPFHVEHGGPNSAIRHVGDLGNITSCPSSKVANVLIQDNVISLFGDLSIIGRTLVVHENQDDLGLGGN-LSKTTGNAGARVACGIL 148          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.217e-31
Identity = 71/150 (47.33%), Postives = 89/150 (59.33%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKG---GHELSKTTGNAGGRVACRII 508
            +AVAVL G  GV GTV FSQ+ +  P  + G + GL PG HGFHVH  GD+TNGC S GPHFNP  K HG P+D+ RH              A F + D+ +   G ++++GR++VV    DDLGKG     E S  TGN G RVAC +I
Sbjct:    4 RAVAVLRGDPGVTGTVWFSQDKESDPCVIKGEIKGLTPGLHGFHVHQYGDSTNGCTSAGPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAGTDDLGKGVGEKKEESLKTGNRGARVACGVI 153          
The following BLAST results are available for this feature:
BLAST of DY260176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_ASPNG2.619e-3248.34Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_ASPNC2.619e-3248.34Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_BOTFU4.468e-3249.67Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckel... [more]
SODC_YARLI5.835e-3249.67Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytic... [more]
SODC_HUMLT7.621e-3249.01Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=... [more]
SODC_YEAST1.300e-3149.01Superoxide dismutase [Cu-Zn] OS=Saccharomyces cere... [more]
SODC_HORSE1.698e-3146.98Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC_EMENI1.698e-3149.01Superoxide dismutase [Cu-Zn] OS=Emericella nidulan... [more]
SODC4_DICDI1.698e-3151.33Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium di... [more]
SODC_HAECO2.217e-3147.33Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260176 ID=DY260176; Name=DY260176; organism=Citrus clementina; type=EST; length=895bp
TTTCTCTCCACCTTCCCTCCTCATTTTCCTCCCTCCAAGGGGTGTTCTGA
GATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAG
GGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAAC
TGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATG
TTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCAC
TTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCA
TGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTT
TTACAGTTGTTGACAATCAGATTCCTCCTTTCGGACCAAATTCCATTATT
GGAAGGGCTGTTGTAGTCCCACGCGATCCCGATGATCTTGGCAAGGGCGG
TCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCCTGCC
GCATCATTGGCCCTCCAGGATGAAGCCCCCTCTCCTCCGACAATAATAAA
TTCCTTTGATATGATGTTTTGAGTGGATTATACTCCCTATATGCCTGAGT
GTGACCTTTCCAAAATAATGAACCTTGAATAAAAAAAAACTAAAAACTTT
GTTGTGTAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCCTGGACAAAT
TTGGCCTTTAAAAAAAAGCTTGGCTAACCATTTTGTTGCCACAAACCGGG
CCCCTTCCTTCAAAAAAAAAATCCTTTTTTTTCCCCCCCCCCCCGAATAC
CCCCCATAAGCGGGGTCCAATACACGGGCCCCACCCGTTTTTCCCGGGGC
CCTCCCGGCCCCTGTTCCTCAAAAATCTTTCAAGGTATACTCCCC
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