DY260176

Overview
NameDY260176
Unique NameDY260176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_ASPFL (Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus GN=sodC PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 73/151 (48.34%), Postives = 89/151 (58.94%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAV G ++ + GTV+F Q + + PTTVS +++G        FHVH  GD TNGC S GPHFNP GKEHG PEDENRH              A  +  D  I   G  S++GR +V+    DDLG+  H  SK TGNAG R AC +IG
Sbjct:    1 MVKAVAVRGDSK-ISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIG 150          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_COLGL (Superoxide dismutase [Cu-Zn] OS=Colletotrichum gloeosporioides GN=SOD1 PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 6.452e-31
Identity = 70/151 (46.36%), Postives = 85/151 (56.29%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAV V+ G   V G++ F QE +  PT ++  +SG       G H+H  GD TNGC S GPHFNP  K HG PED NRH              +  TV D+ +   GP S+IGR +VV    DDLGKG +E S  TGNAG R AC +IG
Sbjct:    1 MVKAVCVVRGDSKVTGSIVFEQESESAPTKITWDISGNDANAKRGMHIHTFGDNTNGCTSAGPHFNPHNKTHGAPEDSNRHVGDLGNIETDANGNSKGTVTDSHVKLIGPESVIGRTIVVHGGTDDLGKGDNEESLKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_PAESI (Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinensis GN=SOD1 PE=3 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 1.100e-30
Identity = 72/151 (47.68%), Postives = 86/151 (56.95%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKP-GPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAV VL G   + G V+F QE D  PTT+S  +S        GFH+   GD TNGC S GPHFNP GK HG   DENRH              +  ++ D  I   GP+S+IGR VV+    DDLGKGG++ S  TGNAG R AC +IG
Sbjct:    1 MVKAVCVLRGDSKITGIVNFEQESDSSPTTISWEISNHDADAKRGFHITPFGDNTNGCTSAGPHFNPHGKTHGNVTDENRHVGDMGNIETDCDGNSKGSIKDKLIKLIGPHSVIGRTVVIHAGTDDLGKGGNDESLKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_KLULA (Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lactis GN=SOD1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.877e-30
Identity = 73/151 (48.34%), Postives = 82/151 (54.30%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MV AVAVL G   V G V F QE  D  T +S  ++G       GFH+H  GD TNGC S GPHFNP  K HG PEDE RH              +  ++ D  I   GP SI+GR VVV    DDLGKGG   S  TGNAG R AC +IG
Sbjct:    1 MVNAVAVLKGDSSVSGIVRFEQESEDQQTKISWEITGNDANALRGFHIHTFGDNTNGCTSAGPHFNPFNKNHGAPEDEERHVGDLGNIPTDAQGISKGSLTDKHIKLLGPLSIVGRTVVVHAGQDDLGKGGDAESLKTGNAGARHACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.202e-30
Identity = 70/150 (46.67%), Postives = 89/150 (59.33%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGPTTV-SGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKG---GHELSKTTGNAGGRVACRII 508
            +AVAVL G E V GT+  +Q+ +    V  G + GL PG HGFHVH  GD+TNGC+S GPHFNP GK HG P+ E RH              A   + D  +  +GPN+++GR++VV    DDLG+G     E SK TGNAG R AC +I
Sbjct:   26 RAVAVLRG-ETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVI 174          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.462e-30
Identity = 76/164 (46.34%), Postives = 91/164 (55.49%), Query Frame = 2
Query:   50 RSHSTMV------KAVAVLGGTEGVKGTVSFSQEGDGP-TTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGG---HELSKTTGNAGGRVACRIIG 511
            RSHS  +      +AVAVL G  GV G + F Q   G  TT+SGS+SGL PG HGFHVH  GD TNGC S G H+NP GK HG P D  +H              A   +    I   GP S+IG ++VV  + DDLG+G     E S  TGNAG R+AC +IG
Sbjct:   33 RSHSNGMHGNGARRAVAVLRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHANTDDLGQGTGNMREESLKTGNAGSRLACGVIG 196          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CAEBR (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.217e-29
Identity = 69/150 (46.00%), Postives = 86/150 (57.33%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKG---GHELSKTTGNAGGRVACRII 508
            +AVAVL G + V GT+  +Q  +  P  + G + GL PG HGFHVH  GD+TNGC+S GPHFNP GK HG P  E RH              A   + D  I  +G N++IGR++VV    DDLG+G     E S  TGNAG R AC +I
Sbjct:   26 RAVAVLRG-DVVSGTIWITQNSESDPAVIEGEIKGLTPGLHGFHVHQYGDSTNGCLSAGPHFNPFGKTHGGPNSETRHVGDLGNVEAGADGVAKVHITDKLITLYGANTVIGRSMVVHAGQDDLGQGVGDKAEESAKTGNAGARAACGVI 174          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.217e-29
Identity = 66/149 (44.30%), Postives = 90/149 (60.40%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRII 508
            MV A+ ++ G  GV+G V+ SQE +G P  ++G++SGL PG HG HVH  GDT+NGC+S G H+NP  +EHG P D  RH              AT ++ D  +  FG  S++GR +V+  D DD G+G    SKT G++G RV C II
Sbjct:    1 MVNAIVIIKGL-GVEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHSDRDDYGRGNFPDSKTAGHSGKRVGCGII 148          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_NPVAC (Putative superoxide dismutase [Cu-Zn] OS=Autographa californica nuclear polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.075e-29
Identity = 68/149 (45.64%), Postives = 90/149 (60.40%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTAT-FTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRII 508
            +KA+ ++ G   V G + F QE  + P  +SG L  L  G HGFHVH  GDT+NGC S G HFNP  ++HG P+ E RH             + T   ++DN +  +GP++IIGR++VV  D DDLG   H LSKTTGN+GGR+ C II
Sbjct:    1 MKAICIISGD--VHGKIYFQQESANQPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSAGYNSLTEVNMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTDHPLSKTTGNSGGRLGCGII 147          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.711e-29
Identity = 65/145 (44.83%), Postives = 84/145 (57.93%), Query Frame = 2
Query:   74 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRII 508
            AVA+LGG   V+G V F Q       + G++ GL+PG HG HVH  GD TN C S G HFNP G  HG P+D +RH              A F + D Q+  +    +IGR++++    DDLG+GGH LSK TGN+G R+AC II
Sbjct:   89 AVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVW---DVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGII 230          
The following BLAST results are available for this feature:
BLAST of DY260176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_ASPFL3.782e-3148.34Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus... [more]
SODC_COLGL6.452e-3146.36Superoxide dismutase [Cu-Zn] OS=Colletotrichum glo... [more]
SODC_PAESI1.100e-3047.68Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinen... [more]
SODC_KLULA1.877e-3048.34Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lact... [more]
SODC_CAEEL3.202e-3046.67Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODE_ONCVO5.462e-3046.34Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC_CAEBR1.217e-2946.00Superoxide dismutase [Cu-Zn] OS=Caenorhabditis bri... [more]
SODC6_DICDI1.217e-2944.30Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]
SODC_NPVAC2.075e-2945.64Putative superoxide dismutase [Cu-Zn] OS=Autograph... [more]
CCS_HUMAN2.711e-2944.83Copper chaperone for superoxide dismutase OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260176 ID=DY260176; Name=DY260176; organism=Citrus clementina; type=EST; length=895bp
TTTCTCTCCACCTTCCCTCCTCATTTTCCTCCCTCCAAGGGGTGTTCTGA
GATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAG
GGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAAC
TGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATG
TTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCAC
TTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCA
TGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTT
TTACAGTTGTTGACAATCAGATTCCTCCTTTCGGACCAAATTCCATTATT
GGAAGGGCTGTTGTAGTCCCACGCGATCCCGATGATCTTGGCAAGGGCGG
TCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCCTGCC
GCATCATTGGCCCTCCAGGATGAAGCCCCCTCTCCTCCGACAATAATAAA
TTCCTTTGATATGATGTTTTGAGTGGATTATACTCCCTATATGCCTGAGT
GTGACCTTTCCAAAATAATGAACCTTGAATAAAAAAAAACTAAAAACTTT
GTTGTGTAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCCTGGACAAAT
TTGGCCTTTAAAAAAAAGCTTGGCTAACCATTTTGTTGCCACAAACCGGG
CCCCTTCCTTCAAAAAAAAAATCCTTTTTTTTCCCCCCCCCCCCGAATAC
CCCCCATAAGCGGGGTCCAATACACGGGCCCCACCCGTTTTTCCCGGGGC
CCTCCCGGCCCCTGTTCCTCAAAAATCTTTCAAGGTATACTCCCC
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