DY260176

Overview
NameDY260176
Unique NameDY260176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.540e-29
Identity = 67/145 (46.21%), Postives = 84/145 (57.93%), Query Frame = 2
Query:   80 AVLGGTEG-VKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            AV GG      G +   Q G     ++GS+SGL+PG HGFH+H  GD  NGC++ G HFNP    HG PED NRH                  + D+ I   G +++IGRA+V+  D DDLG+G  ELSKTTGNAG RVAC +IG
Sbjct:   38 AVKGGNPAKTVGIIDLVQTGT-LVKMNGSVSGLQPGLHGFHIHEKGDLGNGCLAAGAHFNPHKMMHGAPEDSNRHVGDLGNIETPKTGDTPILISDSVISLTGQHNVIGRAIVIHADMDDLGRGTSELSKTTGNAGARVACGVIG 181          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.540e-29
Identity = 69/150 (46.00%), Postives = 86/150 (57.33%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTAT-FTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +KA+ ++ G     G + F Q   D P +++G L  L  G HGFHVH  GDT+NGC S G HFNP  + HG P+   RH               T   + DN I  FGP SI+GR++VV  D DDLG G H LSKTTGN+GGR+ C IIG
Sbjct:    1 MKAICIVAGE--ASGRIYFKQGAPDEPVSITGYLLNLPRGLHGFHVHEFGDTSNGCTSAGEHFNPTRQRHGAPDAAERHVGDLGNVRSAGCTALTAIHMSDNVITLFGPLSILGRSLVVHTDRDDLGLGEHPLSKTTGNSGGRLGCGIIG 148          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.540e-29
Identity = 65/145 (44.83%), Postives = 84/145 (57.93%), Query Frame = 2
Query:   74 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRII 508
            AVA++ G+  V+G V F Q       + G++ GL+PG HG HVH  GD T  C S G HFNP G  HG P+D +RH              ATF + D Q+  +    +IGR++VV    DDLG+GGH LSK TGN+G R+AC II
Sbjct:   89 AVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKVW---DVIGRSLVVDEGEDDLGRGGHPLSKVTGNSGKRLACGII 230          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.038e-29
Identity = 65/145 (44.83%), Postives = 83/145 (57.24%), Query Frame = 2
Query:   74 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRII 508
            AVA+LGG+  V+G V F Q       + G++ GLKPG HG HVH  GD T  C S G HFNP G  HG P+D +RH              A F + D  +  +    +IGR++V+    DDLG+GGH LSK TGN+G R+AC II
Sbjct:   89 AVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGII 230          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.038e-29
Identity = 64/145 (44.14%), Postives = 83/145 (57.24%), Query Frame = 2
Query:   74 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRII 508
            AVA+L G   ++G V F Q       + G++ GL+PG HG HVH  GD T  C S G HFNP G  HG P+D +RH              ATF + D Q+  +    +IGR++V+    DDLG+GGH LSK TGN+G R+AC II
Sbjct:   89 AVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGII 230          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODE_CAEEL (Extracellular superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-4 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 5.112e-28
Identity = 69/156 (44.23%), Postives = 89/156 (57.05%), Query Frame = 2
Query:   44 VLRSHSTMVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            V+R+ + + KA A    TE + GT+ F Q G     ++GS+SGL  G HGFH+H  GDT NGC+S G H+NP    HG P+D NRH                 +V D+     G  SIIGR+VV+    DDLG+G  + SKTTGNAG R+AC  IG
Sbjct:   21 VIRARAYIFKAEAGKIPTELI-GTIDFDQSGSF-LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.259e-26
Identity = 69/149 (46.31%), Postives = 84/149 (56.38%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPG-PHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            V A+AVL G   VKGTV F +E      +S  +SGLKP   HGFHVH  GD T+GC S   HFNP G  HG P+ + RH              A ++  D+ I   G  +IIGRA+VV  D DDLG GG+  S  TGNAG R+ C +IG
Sbjct:   35 VSAIAVLEGP--VKGTVRFVEESS-KVKISVDISGLKPNRKHGFHVHEAGDLTDGCTSACAHFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYDSMIKLRGKCNIIGRAIVVHADTDDLGLGGNAESLKTGNAGKRIGCAVIG 180          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODE_DIRIM (Extracellular superoxide dismutase [Cu-Zn] OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.785e-26
Identity = 65/151 (43.05%), Postives = 83/151 (54.97%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGP-TTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKG---GHELSKTTGNAGGRVACRIIG 511
            KAVAVL  ++ V G + F Q      TT+ G+++GL PG HGFH+H  G   NGC S   H+NP  K HG P +  +H              A   ++ N I   GP S+IGR++VV  +PDDLGKG     E S  TGNAG R+ C IIG
Sbjct:   41 KAVAVLK-SDTVNGIIYFQQNNRASATTIYGTINGLTPGLHGFHIHQYGIKANGCTSAAAHYNPFEKTHGRPTNNIKHIGDLRNIKAGADGVANVNIISNHIQLSGPLSVIGRSLVVHANPDDLGKGNGDAREESLKTGNAGSRIVCSIIG 190          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_SCHPO (Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyces pombe GN=sod1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.249e-26
Identity = 69/151 (45.70%), Postives = 79/151 (52.32%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MV+AVAVL G   V G V+F Q + +   +V   L G       GFH+H  GD TNGC S GPHFNP GK HG      RH                 T  D+ I  FG NSIIGR +V+    DDLGKG  E S  TGNAG R AC +IG
Sbjct:    1 MVRAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROOB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila obscura GN=Sod PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.539e-24
Identity = 56/108 (51.85%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  107 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRD 427
            KGTV F QE  + P  V+G + GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                 ++ D++I  FG +SIIGR VVV  D
Sbjct:    6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGDNTNGCMSSGPHFNPRSKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
The following BLAST results are available for this feature:
BLAST of DY260176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODE_HAECO3.540e-2946.21Extracellular superoxide dismutase [Cu-Zn] OS=Haem... [more]
SODC_NPVOP3.540e-2946.00Putative superoxide dismutase [Cu-Zn] OS=Orgyia ps... [more]
CCS_RAT3.540e-2944.83Copper chaperone for superoxide dismutase OS=Rattu... [more]
CCS_PIG6.038e-2944.83Copper chaperone for superoxide dismutase OS=Sus s... [more]
CCS_MOUSE6.038e-2944.14Copper chaperone for superoxide dismutase OS=Mus m... [more]
SODE_CAEEL5.112e-2844.23Extracellular superoxide dismutase [Cu-Zn] OS=Caen... [more]
SODC_PBCV11.259e-2646.31Superoxide dismutase [Cu-Zn] OS=Paramecium bursari... [more]
SODE_DIRIM4.785e-2643.05Extracellular superoxide dismutase [Cu-Zn] OS=Diro... [more]
SODC_SCHPO6.249e-2645.70Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyce... [more]
SODC_DROOB1.539e-2451.85Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260176 ID=DY260176; Name=DY260176; organism=Citrus clementina; type=EST; length=895bp
TTTCTCTCCACCTTCCCTCCTCATTTTCCTCCCTCCAAGGGGTGTTCTGA
GATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAG
GGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAAC
TGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATG
TTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCAC
TTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCA
TGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTT
TTACAGTTGTTGACAATCAGATTCCTCCTTTCGGACCAAATTCCATTATT
GGAAGGGCTGTTGTAGTCCCACGCGATCCCGATGATCTTGGCAAGGGCGG
TCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCCTGCC
GCATCATTGGCCCTCCAGGATGAAGCCCCCTCTCCTCCGACAATAATAAA
TTCCTTTGATATGATGTTTTGAGTGGATTATACTCCCTATATGCCTGAGT
GTGACCTTTCCAAAATAATGAACCTTGAATAAAAAAAAACTAAAAACTTT
GTTGTGTAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCCTGGACAAAT
TTGGCCTTTAAAAAAAAGCTTGGCTAACCATTTTGTTGCCACAAACCGGG
CCCCTTCCTTCAAAAAAAAAATCCTTTTTTTTCCCCCCCCCCCCGAATAC
CCCCCATAAGCGGGGTCCAATACACGGGCCCCACCCGTTTTTCCCGGGGC
CCTCCCGGCCCCTGTTCCTCAAAAATCTTTCAAGGTATACTCCCC
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