DY260176

Overview
NameDY260176
Unique NameDY260176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.478e-24
Identity = 66/146 (45.21%), Postives = 78/146 (53.42%), Query Frame = 2
Query:   65 MVKAVAVLGGTEG-VKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVA 496
            MVKAV VL GT G V GTV F QE D  P  ++G + GL PG HGFHVHA GD TN               H  P D++RH              A   + D  +   GP SIIGR +V+    DDLGKGG++ S  TGNAGGR+A
Sbjct:    1 MVKAVCVLKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGN-------VAKIDITDKMLTLNGPLSIIGRTMVIHEKADDLGKGGNDESLKTGNAGGRMA 139          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROPE (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila persimilis GN=Sod PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.849e-24
Identity = 56/108 (51.85%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  107 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRD 427
            KGTV F QE  + P  V+G   GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                 ++ D++I  FG +SIIGR VVV  D
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROPB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila pseudoobscura bogotana GN=Sod PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.849e-24
Identity = 56/108 (51.85%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  107 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRD 427
            KGTV F QE  + P  V+G   GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                 ++ D++I  FG +SIIGR VVV  D
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROMI (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila miranda GN=Sod PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.849e-24
Identity = 56/108 (51.85%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  107 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRD 427
            KGTV F QE  + P  V+G   GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                 ++ D++I  FG +SIIGR VVV  D
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROTO (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila tolteca GN=Sod PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.639e-24
Identity = 55/108 (50.93%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  107 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRD 427
            KGTV F QE  + P  V+G + GL  G HGFHVH  G+ TNGCMS+GPHFNP  KEHG P D NRH                 ++ D++I  FG NSIIGR VVV  D
Sbjct:    6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGNNTNGCMSSGPHFNPGNKEHGAPTDGNRHLGDLGNIQAAGDSPTAVSITDSKITLFGANSIIGRTVVVHAD 113          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROMD (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila madeirensis GN=Sod PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.702e-23
Identity = 54/108 (50.00%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  107 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRD 427
            KG V F QE  + P  V+G + GL  G HGFHVH  GD TNGCMS+GPH+NP  KEHG P DENRH                 ++ D++I  FG +SIIGR VVV  D
Sbjct:    6 KGIVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHYNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.262e-18
Identity = 58/137 (42.34%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  110 GTVSFSQEGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFT--VVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            G V F+Q GD    V+GS++GL PG   G HVH  G   N C+  GPHFNP  + HGP     RHA             A F   V    + PF  +  IGRA+V+  + DDLG+   E S+TTGN+G R+AC  IG
Sbjct:   47 GAVWFTQHGDY-MYVNGSVAGLPPGKLLGTHVHRYGGLGNMCLEAGPHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAKFDFYVTIKGLGPF--DGFIGRALVIHANRDDLGRNRDEGSRTTGNSGPRLACATIG 180          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODE_RAT (Extracellular superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod3 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.437e-16
Identity = 53/142 (37.32%), Postives = 66/142 (46.48%), Query Frame = 2
Query:  104 VKGTVSFSQEG-----DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGP-PEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            + G V F Q G     +    + G  +      H  HVH  GD + GC STGPH+NP G  H   P D                  AT           GP+SI+GRAVVV    DDLGKGG++ S   GNAG R+AC ++G
Sbjct:   85 ITGLVLFRQLGPSSRLEASFNLEGFPAEQNTSNHAIHVHEFGDLSQGCESTGPHYNPLGVPHPQHPGDFGNFVVRDGRLWKHRMGLATSLA--------GPHSILGRAVVVHAGEDDLGKGGNQASVQNGNAGRRLACCVVG 218          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODE_RABIT (Extracellular superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD3 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.463e-14
Identity = 53/148 (35.81%), Postives = 65/148 (43.92%), Query Frame = 2
Query:  104 VKGTVSFSQEGDGPTT-----VSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGP-PEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIGPPG*SP 529
            V G V F Q G G        + G            HVH  GD + GC STG H+NP   +H   P D    A             A            GP+SI+GRAVVV    DDLG+GG+  S   GNAG R+AC ++G  G +P
Sbjct:   82 VSGLVVFRQLGPGAQLEAFFDLEGFPVEANLSSRAIHVHQFGDLSQGCDSTGAHYNPLAVQHPQHPGDFGNFAVRDGRLWKYRSGLAASLA--------GPHSIVGRAVVVHAGEDDLGRGGNAASVENGNAGPRLACCVVGASGPAP 221          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODE_HUMAN (Extracellular superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD3 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.217e-14
Identity = 45/109 (41.28%), Postives = 55/109 (50.46%), Query Frame = 2
Query:  197 HVHALGDTTNGCMSTGPHFNPAGKEHGP-PEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIGPPG 520
            HVH  GD + GC STGPH+NP    H   P D    A             A            GP+SI+GRAVVV    DDLG+GG++ S   GNAG R+AC ++G  G
Sbjct:  114 HVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLA--------GPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGVCG 214          
The following BLAST results are available for this feature:
BLAST of DY260176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_LAMCR4.478e-2445.21Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampany... [more]
SODC_DROPE5.849e-2451.85Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROPB5.849e-2451.85Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMI5.849e-2451.85Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROTO7.639e-2450.93Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMD1.702e-2350.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODE_SCHMA1.262e-1842.34Extracellular superoxide dismutase [Cu-Zn] OS=Schi... [more]
SODE_RAT3.437e-1637.32Extracellular superoxide dismutase [Cu-Zn] OS=Ratt... [more]
SODE_RABIT2.463e-1435.81Extracellular superoxide dismutase [Cu-Zn] OS=Oryc... [more]
SODE_HUMAN3.217e-1441.28Extracellular superoxide dismutase [Cu-Zn] OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260176 ID=DY260176; Name=DY260176; organism=Citrus clementina; type=EST; length=895bp
TTTCTCTCCACCTTCCCTCCTCATTTTCCTCCCTCCAAGGGGTGTTCTGA
GATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAG
GGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAAC
TGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATG
TTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCAC
TTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCA
TGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTT
TTACAGTTGTTGACAATCAGATTCCTCCTTTCGGACCAAATTCCATTATT
GGAAGGGCTGTTGTAGTCCCACGCGATCCCGATGATCTTGGCAAGGGCGG
TCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCCTGCC
GCATCATTGGCCCTCCAGGATGAAGCCCCCTCTCCTCCGACAATAATAAA
TTCCTTTGATATGATGTTTTGAGTGGATTATACTCCCTATATGCCTGAGT
GTGACCTTTCCAAAATAATGAACCTTGAATAAAAAAAAACTAAAAACTTT
GTTGTGTAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCCTGGACAAAT
TTGGCCTTTAAAAAAAAGCTTGGCTAACCATTTTGTTGCCACAAACCGGG
CCCCTTCCTTCAAAAAAAAAATCCTTTTTTTTCCCCCCCCCCCCGAATAC
CCCCCATAAGCGGGGTCCAATACACGGGCCCCACCCGTTTTTCCCGGGGC
CCTCCCGGCCCCTGTTCCTCAAAAATCTTTCAAGGTATACTCCCC
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