DY260176

Overview
NameDY260176
Unique NameDY260176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14665 contig Ccv1_Contig14665:3..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 3.087e-41
Identity = 85/150 (56.67%), Postives = 97/150 (64.67%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAV V+ G    KGTV F QE  + P  V+G + GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                 ++ D++I  FG +SIIGR VVV  D DDLGKGGHELSKTTGNAG R+ C +IG
Sbjct:    1 MVKAVCVINGD--AKGTVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKTTGNAGARIGCGVIG 148          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROSI (Superoxide dismutase [Cu-Zn] OS=Drosophila simulans GN=Sod PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.265e-41
Identity = 85/150 (56.67%), Postives = 97/150 (64.67%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I  FG +SIIGR VVV  D DDLG+GGHELSK+TGNAG R+ C +IG
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROSE (Superoxide dismutase [Cu-Zn] OS=Drosophila sechellia GN=Sod PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.265e-41
Identity = 85/150 (56.67%), Postives = 97/150 (64.67%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I  FG +SIIGR VVV  D DDLG+GGHELSK+TGNAG R+ C +IG
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROME (Superoxide dismutase [Cu-Zn] OS=Drosophila melanogaster GN=Sod PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.265e-41
Identity = 85/150 (56.67%), Postives = 97/150 (64.67%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I  FG +SIIGR VVV  D DDLG+GGHELSK+TGNAG R+ C +IG
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROMA (Superoxide dismutase [Cu-Zn] OS=Drosophila mauritiana GN=Sod PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.265e-41
Identity = 85/150 (56.67%), Postives = 97/150 (64.67%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I  FG +SIIGR VVV  D DDLG+GGHELSK+TGNAG R+ C +IG
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROYA (Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 6.877e-41
Identity = 85/150 (56.67%), Postives = 98/150 (65.33%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +VKAV V+ G    KGTV F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I  FG +SIIGR VVV  D DDLGKGGHELSK+TGNAG R+ C +IG
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROOR (Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 6.877e-41
Identity = 85/150 (56.67%), Postives = 98/150 (65.33%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +VKAV V+ G    KGTV F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I  FG +SIIGR VVV  D DDLGKGGHELSK+TGNAG R+ C +IG
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSRITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.532e-40
Identity = 83/150 (55.33%), Postives = 95/150 (63.33%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            + KAV V+ G    KGTV F QE    P  V G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                  + D++I  FG NSI+GR VVV  DPDDLGKGGHELSK+TGNAG R+ C +IG
Sbjct:    2 VAKAVCVINGD--AKGTVYFEQEDACAPVKVCGEITGLNKGQHGFHVHEFGDNTNGCMSSGPHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSKITLFGENSIVGRTVVVHADPDDLGKGGHELSKSTGNAGARIGCGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 2.001e-40
Identity = 84/150 (56.00%), Postives = 98/150 (65.33%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +VKAV V+ G    KGTV F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I  FG +SIIGR VVV  D DDLG+GGHELSK+TGNAG R+ C +IG
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.001e-40
Identity = 81/136 (59.56%), Postives = 90/136 (66.18%), Query Frame = 2
Query:  107 KGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KGTV F QE +  P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D +I  FG NSIIGR VVV  DPDDLGKGGHELSKTTGNAG R+ C +IG
Sbjct:    6 KGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIG 141          
The following BLAST results are available for this feature:
BLAST of DY260176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_DROPS3.087e-4156.67Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoo... [more]
SODC_DROSI5.265e-4156.67Superoxide dismutase [Cu-Zn] OS=Drosophila simulan... [more]
SODC_DROSE5.265e-4156.67Superoxide dismutase [Cu-Zn] OS=Drosophila sechell... [more]
SODC_DROME5.265e-4156.67Superoxide dismutase [Cu-Zn] OS=Drosophila melanog... [more]
SODC_DROMA5.265e-4156.67Superoxide dismutase [Cu-Zn] OS=Drosophila mauriti... [more]
SODC_DROYA6.877e-4156.67Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba ... [more]
SODC_DROOR6.877e-4156.67Superoxide dismutase [Cu-Zn] OS=Drosophila orena G... [more]
SODC_CHYAM1.532e-4055.33Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_DROTE2.001e-4056.00Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]
SODC_DROBS2.001e-4059.56Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260176 ID=DY260176; Name=DY260176; organism=Citrus clementina; type=EST; length=895bp
TTTCTCTCCACCTTCCCTCCTCATTTTCCTCCCTCCAAGGGGTGTTCTGA
GATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAG
GGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAAC
TGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATG
TTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCAC
TTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCA
TGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTT
TTACAGTTGTTGACAATCAGATTCCTCCTTTCGGACCAAATTCCATTATT
GGAAGGGCTGTTGTAGTCCCACGCGATCCCGATGATCTTGGCAAGGGCGG
TCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCCTGCC
GCATCATTGGCCCTCCAGGATGAAGCCCCCTCTCCTCCGACAATAATAAA
TTCCTTTGATATGATGTTTTGAGTGGATTATACTCCCTATATGCCTGAGT
GTGACCTTTCCAAAATAATGAACCTTGAATAAAAAAAAACTAAAAACTTT
GTTGTGTAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCCTGGACAAAT
TTGGCCTTTAAAAAAAAGCTTGGCTAACCATTTTGTTGCCACAAACCGGG
CCCCTTCCTTCAAAAAAAAAATCCTTTTTTTTCCCCCCCCCCCCGAATAC
CCCCCATAAGCGGGGTCCAATACACGGGCCCCACCCGTTTTTCCCGGGGC
CCTCCCGGCCCCTGTTCCTCAAAAATCTTTCAAGGTATACTCCCC
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