DY260176

Overview
NameDY260176
Unique NameDY260176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14665 contig Ccv1_Contig14665:3..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 2.289e-36
Identity = 81/149 (54.36%), Postives = 92/149 (61.74%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTAT-FTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAV VL G   V GTV F Q+ +  P  VSG + GL  G HGFHVH  GD TNGC S G HFNP  ++HG P    RH               T  ++ D+QI   GPNSIIGR +VV  DPDDLG GGHELSKTTGNAGGR+AC +IG
Sbjct:    4 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIG 150          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.990e-36
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  +  D+ I   G +SIIGR +VV    DDLGKGG+E SK TGNAGGR+AC +IG
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.990e-36
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  +  D+ I   G +SIIGR +VV    DDLGKGG+E SK TGNAGGR+AC +IG
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.990e-36
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  +  D+ I   G +SIIGR +VV    DDLGKGG+E SK TGNAGGR+AC +IG
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 8.699e-36
Identity = 80/151 (52.98%), Postives = 92/151 (60.93%), Query Frame = 2
Query:   65 MVKAVAVLGGTEGVKGTVSFSQEGDGP-TTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            MVKAVAVL G  GV G V F QE D   TT+S +++G +P   HGFH+H  GD TNGC S+G HFNP  K HG PEDENRH              A  +  D  I  FGP SI+GR VVV    DDLG+GG+E S  TGNAG R AC +IG
Sbjct:    1 MVKAVAVLKGDAGVSGVVHFEQEADAAVTTISWNITGFEPNTEHGFHIHEFGDVTNGCTSSGSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.938e-35
Identity = 76/149 (51.01%), Postives = 93/149 (62.42%), Query Frame = 2
Query:   68 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG PEDE RH              A  ++ D+ I   G +SIIGR +VV    DDLGKGG+E S  TGNAG R+AC +IG
Sbjct:    3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIG 151          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.531e-35
Identity = 76/147 (51.70%), Postives = 90/147 (61.22%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD  I   G  SIIGR +VV   PDDLG+GG+E S  TGNAGGR+AC +IG
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGGRLACGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_CARCR (Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.531e-35
Identity = 77/160 (48.12%), Postives = 92/160 (57.50%), Query Frame = 2
Query:   68 VKAVAVLGGT------------EGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            VKAV VL G             E VKG + F Q+G+GP T+SGS++GL  G HGFHVH  GD TNGC S G HFNP GK HG P+D  RH              A   + D+ I   G  SIIGR +VV    DDLGKGG++ S  TGNAG R+AC ++G
Sbjct:    4 VKAVCVLKGEDPVKEPVKGPVKEPVKGIIYFEQQGNGPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIANKEGVAEVCIKDSLISLTGSQSIIGRTMVVHEKEDDLGKGGNDESLKTGNAGSRLACGVVG 163          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 4.317e-35
Identity = 75/147 (51.02%), Postives = 90/147 (61.22%), Query Frame = 2
Query:   71 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKGGHELSKTTGNAGGRVACRIIG 511
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD+ I   G  SIIGR +VV   PDDLG+GG+E S  TGNAG R+AC +IG
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG 149          
BLAST of DY260176 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.639e-35
Identity = 78/148 (52.70%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   77 VAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPPFGPNSIIGRAVVVPRDPDDLGKG---GHELSKTTGNAGGRVACRII 508
            +AVL G + V G + F QE +G PTT+SG + GL PG HGFHVH  GDTTNGC+S GPHFNP  K HG P DE RH             TA   + D  +   GPNSIIGR++VV  D DDLGKG     + S  TGNAG RVAC I+
Sbjct:    6 IAVLRG-DNVSGIIRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGARVACGIV 152          
The following BLAST results are available for this feature:
BLAST of DY260176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_BOMMO2.289e-3654.36Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]
SODC_MACMU2.990e-3651.68Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU2.990e-3651.68Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA2.990e-3651.68Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_ASHGO8.699e-3652.98Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]
SODC_CEBAP1.938e-3551.01Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC_SHEEP2.531e-3551.70Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODC_CARCR2.531e-3548.13Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE... [more]
SODC_BOSMU4.317e-3551.02Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]
SODC_BRUPA5.639e-3552.70Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260176 ID=DY260176; Name=DY260176; organism=Citrus clementina; type=EST; length=895bp
TTTCTCTCCACCTTCCCTCCTCATTTTCCTCCCTCCAAGGGGTGTTCTGA
GATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAG
GGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAAC
TGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATG
TTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCAC
TTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCA
TGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTT
TTACAGTTGTTGACAATCAGATTCCTCCTTTCGGACCAAATTCCATTATT
GGAAGGGCTGTTGTAGTCCCACGCGATCCCGATGATCTTGGCAAGGGCGG
TCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCCTGCC
GCATCATTGGCCCTCCAGGATGAAGCCCCCTCTCCTCCGACAATAATAAA
TTCCTTTGATATGATGTTTTGAGTGGATTATACTCCCTATATGCCTGAGT
GTGACCTTTCCAAAATAATGAACCTTGAATAAAAAAAAACTAAAAACTTT
GTTGTGTAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCCTGGACAAAT
TTGGCCTTTAAAAAAAAGCTTGGCTAACCATTTTGTTGCCACAAACCGGG
CCCCTTCCTTCAAAAAAAAAATCCTTTTTTTTCCCCCCCCCCCCGAATAC
CCCCCATAAGCGGGGTCCAATACACGGGCCCCACCCGTTTTTCCCGGGGC
CCTCCCGGCCCCTGTTCCTCAAAAATCTTTCAAGGTATACTCCCC
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