DY260183

Overview
NameDY260183
Unique NameDY260183
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1105
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260183 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.714e-31
Identity = 68/129 (52.71%), Postives = 83/129 (64.34%), Query Frame = 3
Query:   93 RHPPPGDQQEKPPYLDEEYRKVTXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHG-ANGPTFGTKVSNYPPCPKPDLIKGLRAHTDARGIILLFQDDKVSGLPLPKDGQWIDVPPLPHSIVVHLGD 476
            RH P  +  + P  LD++YR++                           GYL K F G A  PTFGTKVS+YPPCP+PDL++GLRAHTDA GIILLFQDD+V GL L KDG+W+DVPP+ HSIVV+LGD
Sbjct:   98 RHLPESNIADIPD-LDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGD 225          

HSP 2 Score: 24.6386 bits (52), Expect = 1.714e-31
Identity = 13/43 (30.23%), Postives = 21/43 (48.84%), Query Frame = 1
Query:  481 IDVIPNGQYKSVELTAISQTHRKGPDVPSLPPQPRNLIPRPFP 609
            ++VI NG+YKSV    ++QT      + S      + +  P P
Sbjct:  227 LEVITNGRYKSVIHRVVAQTDGNRMSIASFYNPGSDAVISPAP 269          
BLAST of DY260183 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.714e-31
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 3
Query:  240 GYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDARGIILLFQDDKVSGLPLPKDGQWIDVPPLPHSIVVHLGD 476
            GYLK+VF G +   PTFGTKVSNYPPCPKP+LIKGLRAHTDA GIILLFQDD VSGL L KD +WIDVPP+ HSIVV++GD
Sbjct:  137 GYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGD 217          

HSP 2 Score: 27.7202 bits (60), Expect = 1.714e-31
Identity = 16/61 (26.23%), Postives = 27/61 (44.26%), Query Frame = 1
Query:  481 IDVIPNGQYKSVELTAISQTHRKGPDVPSLPPQPRNLIPRPFPHPPRLTQKPTKTQVTPRF 663
            ++VI NG+YKSV    ++QT+     + S      + +  P P          K +  P+F
Sbjct:  219 LEVITNGKYKSVMHRVVAQTNGNRMSIASFYNPGSDAVIFPAPELVEKEAAEKKKETYPKF 279          
BLAST of DY260183 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.783e-31
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 3
Query:  240 GYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDARGIILLFQDDKVSGLPLPKDGQWIDVPPLPHSIVVHLGD 476
            GYLK+VF G +   PTFGTKVSNYPPCPKPDLIKGLRAHTDA GIILLFQDDKVSGL L KD +WI+VPPL +SIVV++GD
Sbjct:  143 GYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDREWIEVPPLRYSIVVNIGD 223          

HSP 2 Score: 25.7942 bits (55), Expect = 3.783e-31
Identity = 17/63 (26.98%), Postives = 30/63 (47.62%), Query Frame = 1
Query:  481 IDVIPNGQYKSVELTAISQTHRKGPDVPSL--PPQPRNLIPRPFPHPPRLTQKPTKTQVTPRF 663
            ++VI NG+YKSV    ++QT      + S   P     + P P     +  ++  K ++ P+F
Sbjct:  225 LEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAP-ALVEKEAEEEEKKEIYPKF 286          
BLAST of DY260183 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.928e-31
Identity = 68/130 (52.31%), Postives = 81/130 (62.31%), Query Frame = 3
Query:   93 RHPPPGDQQEKPPYLDEEYRKVTXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDARGIILLFQDDKVSGLPLPKDGQWIDVPPLPHSIVVHLGD 476
            RH P  +  E P  L +E+RKV                           GYLK  F G     PTFGTKVSNYPPCP+P+L KGLRAHTDA G+ILLFQDD+V+GL L KDG+W+DVPP+ HSIV++LGD
Sbjct:   92 RHLPVSNLSEIPD-LTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGD 220          

HSP 2 Score: 26.1794 bits (56), Expect = 4.928e-31
Identity = 19/63 (30.16%), Postives = 30/63 (47.62%), Query Frame = 1
Query:  481 IDVIPNGQYKSVELTAISQTHRKGPDVPSLPPQPRNLIPRPFPHPPRLTQKPT--KTQVTPRF 663
            ++VI NG+YKSV    ++QT      + S      + +  P    P L +K    K +V P+F
Sbjct:  222 VEVITNGKYKSVMHRVVAQTDGNRMSLASFYNPGSDAVIFP---APALVEKEAEEKKEVYPKF 281          
BLAST of DY260183 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.373e-23
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 3
Query:  240 GYLKKVFHG--ANGPTFGTKVSNYPPCPKPDLIKGLRAHTDARGIILLFQDDKVSGLPLPKDGQWIDVPPLPHSIVVHLGD 476
            G +KK F G   + P FGTKVS+YPPCP+ DL+KGLRAHTDA G+ILLFQDD+V GL + KDG+WIDV PL  +IV++ GD
Sbjct:  139 GCIKKAFSGDGQHPPFFGTKVSHYPPCPRLDLVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGD 219          

HSP 2 Score: 21.557 bits (44), Expect = 1.373e-23
Identity = 8/21 (38.10%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  481 IDVIPNGQYKSVELTAISQTH 543
            I+V+ NG+YKS     ++ +H
Sbjct:  221 IEVLSNGRYKSAWHRVLATSH 241          
BLAST of DY260183 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.632e-12
Identity = 28/62 (45.16%), Postives = 46/62 (74.19%), Query Frame = 3
Query:  291 KVSNYPPCPKPDLIKGLRAHTDARGIILLFQDDKVSGLPLPKDGQWIDVPPLPHSIVVHLGD 476
            +++ YPPCP+PD + GL  H+D+ G+ +L Q + V GL + KDG+W+ V PLP++ +V++GD
Sbjct:  214 RMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGD 275          

HSP 2 Score: 21.1718 bits (43), Expect = 2.632e-12
Identity = 6/23 (26.09%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  481 IDVIPNGQYKSVELTAISQTHRK 549
            +++I NG Y+S+E   +  + ++
Sbjct:  277 LEIITNGTYRSIEHRGVVNSEKE 299          
BLAST of DY260183 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.639e-11
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 3
Query:  291 KVSNYPPCPKPDLIKGLRAHTDARGIILLFQDDKVSGLPLPKDGQWIDVPPLPHSIVVHLGD 476
            K++ YPPCP+PDL  G+ AHTD   I +L  ++ V GL + KDG W DV  +P++++VH+GD
Sbjct:  215 KINYYPPCPRPDLALGVVAHTDMSYITILVPNE-VQGLQVFKDGHWYDVKYIPNALIVHIGD 275          

HSP 2 Score: 22.7126 bits (47), Expect = 1.639e-11
Identity = 18/63 (28.57%), Postives = 26/63 (41.27%), Query Frame = 1
Query:  481 IDVIPNGQYKSV--ELTAISQTHRKGPDVPSLPPQPRNLIPRP----FPHPPRLTQKPTKTQV 651
            ++++ NG+YKSV    T      R    V   PP    + P P      +PP+   K  K  V
Sbjct:  277 VEILSNGKYKSVYHRTTVNKDKTRMSWPVFLEPPSEHEVGPIPKLLSEANPPKFKTKKYKDYV 339          
BLAST of DY260183 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.027e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  246 LKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDARGIILLFQDDKVSGLPLPKDGQWIDVPPLPHSIVVHLGD 476
            LKK   G N   +  K++ YPPCP+PDL  G+ AHTD   + +L  +D V GL   KDG+W DV  +P+++V+H+GD
Sbjct:  190 LKKAAGGDN-LEYLLKINYYPPCPRPDLALGVVAHTDMSTVTILVPND-VQGLQACKDGRWYDVKYIPNALVIHIGD 264          
BLAST of DY260183 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.851e-11
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  246 LKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDARGIILLFQDDKVSGLPLPKDGQWIDVPPLPHSIVVHLGD 476
            LKK   G +   +  K++ YPPCP+PDL  G+ AHTD   I +L  ++ V GL + KD  W DV  +P+++++H+GD
Sbjct:  190 LKKA-SGGDDLIYMLKINYYPPCPRPDLALGVVAHTDMSAITILVPNE-VQGLQVHKDDHWYDVKYIPNALIIHIGD 264          

HSP 2 Score: 20.7866 bits (42), Expect = 7.851e-11
Identity = 7/12 (58.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  481 IDVIPNGQYKSV 516
            I+++ NG+YKSV
Sbjct:  266 IEIMSNGKYKSV 277          
The following BLAST results are available for this feature:
BLAST of DY260183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ACCO1_ORYSJ1.714e-3152.711-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO_DENCR1.714e-3177.781-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO2_DORSP3.783e-3179.011-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO_PERAE4.928e-3152.311-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO_MUSAC1.373e-2364.201-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
SRG1_ARATH2.632e-1245.16Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_PETHY1.639e-1148.39Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FLS_MALDO2.027e-1145.45Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
FLS_PETCR7.851e-1141.56Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260183 ID=DY260183; Name=DY260183; organism=Citrus clementina; type=EST; length=1105bp
CTTCCCTTTCTGGGCNACTTTGNACCAAAAAGTGCGGGGNACCCAAACCC
TCTGTCAAGGACACAGGACCGCGGAAAGCACCNGACCAAGCGCGCCACCC
CCCCCCAGGCGACCAGCAAGAGAAGCCCCCCTATCTTGACGAGGAATACA
GGAAGGTGACGAAGGAATTTGCATTGAAATTGGAGAAATTAGCAGAGGAG
CTATTGGACTTGTTATGCGAGAATCTTGGATTAGAGAAGGGGTACTTGAA
AAAGGTCTTTCATGGGGCAAACGGACCAACCTTTGGTACCAAAGTTAGCA
ACTACCCACCATGCCCCAAGCCAGATTTGATCAAGGGTCTCCGGGCTCAC
ACCGACGCCCGCGGCATCATCTTGCTCTTCCAGGATGACAAAGTCAGTGG
CCTTCCGCTTCCTAAAGATGGCCAGTGGATTGACGTGCCCCCCTTGCCCC
ACTCCATTGTTGTCCACCTCGGTGACCCTAATTGACGTGATCCCCAATGG
ACAGTACAAGAGTGTGGAGCTCACAGCGATTTCCCAAACCCACCGCAAGG
GCCCGGATGTCCCCAGCCTCCCTCCACAACCCCGGAACTTGATCCCGCGA
CCTTTCCCGCACCCCCCTCGCCTGACACAGAAGCCGACAAAGACACAAGT
GACCCCAAGATTTTGTCTTTGAGGACCCCACGACGCCTCACTGCTCCCCT
CCCGCTCCCCCCCACGAACCCAAAACTCGAGCCCTCGAACCCCGCGGAAA
CCAACCCGACAACTTGTGCCAAGTCCCCTCCTCTCTAAACACATCCCCTT
AAAGCACAACTCTCCCCATCCTGCTGAACCGCGCCGCCCCTTCCCCTTCT
ATTCATTTTACACCCGCCACTCCACCCAACCCACCTTCGTCCTCCCCATC
CCCACAACCAACTTATCAAAACTCATTCCCCCTCCTCCCAAACCCAACAA
ACCAAACACAACCAAAAACCAACTTCTCCTCCTACCCCCCCCAGTAAATT
CTACCATACACCTCGACCCTTCTCACTATACCCCCCCGCTCCACCCCCAG
CCCCGCGAGCTCATCCCAACCTACACGCCCTCATACATAAATCCTACTCA
TCCCC
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