DY260186

Overview
NameDY260186
Unique NameDY260186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_BRAJA (Nitrogen regulatory protein P-II OS=Bradyrhizobium japonicum GN=glnB PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.862e-16
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGE 689
            K+AL  +G++G+TV++ +GFG Q G  E + G+E+  D F+ KVK+EIV+  D VE  ID I   A+TG IGD +IF+  +   IR+RTGE
Sbjct:   17 KEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVD-FLPKVKIEIVIGDDLVERAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGE 106          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB1_METTH (Nitrogen regulatory protein P-II 1 OS=Methanobacterium thermoautotrophicum GN=MTH_662 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.706e-15
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            K AL  MGI G+TVSDV+G G Q G  E + G ++  D  + KV++EIVV  + +E  ++ I E ARTG++GD +IF+  V +V+R+RTGE    A
Sbjct:   20 KDALELMGIHGMTVSDVKGRGQQMGIRESYRGMDYCVD-LLPKVQLEIVVDSEDLERTVEAISENARTGDVGDGKIFVTDVIDVVRIRTGEHGRDA 114          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_RHILV (Nitrogen regulatory protein P-II OS=Rhizobium leguminosarum bv. viciae GN=glnB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.800e-15
Identity = 40/85 (47.06%), Postives = 62/85 (72.94%), Query Frame = 3
Query:  435 MGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGE 689
            +G++G+TV++ +GFG Q G TE + G+E+  D F+ KVK+E+V++ +  E VI+ I + A+TG IGD +IF+  V  VIR+RTGE
Sbjct:   22 VGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKVEVVLADENAEAVIEAIRKAAQTGRIGDGKIFVSNVEEVIRIRTGE 105          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB2_METTH (Nitrogen regulatory protein P-II 2 OS=Methanobacterium thermoautotrophicum GN=MTH_664 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.465e-15
Identity = 43/96 (44.79%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            K AL   G  G+TV++VRG G Q G TE + G ++  D  + K K+EIVV+ + V+ V++ I++ A+TG+IGD +IF+  V  V+R+RTGE  +KA
Sbjct:   20 KNALEAAGCHGMTVTEVRGRGRQLGITESYRGRDYRID-LLPKTKIEIVVNDEDVDTVVETIVKSAQTGDIGDGKIFISGVDEVVRIRTGESGKKA 114          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_RHOCA (Nitrogen regulatory protein P-II OS=Rhodobacter capsulatus GN=glnB PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.444e-14
Identity = 43/96 (44.79%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            K+AL   GI+G++V +V+GFG Q G TE + G+E+  D F+ KVK+E+V+  + V+  I+ I+  ART +IGD +IF+  +   IR+RTGE  E A
Sbjct:   17 KEALQEAGIQGLSVIEVKGFGRQKGHTELYRGAEYVVD-FLPKVKIEMVLPDEMVDIAIEAIVGAARTEKIGDGKIFVSSIEQAIRIRTGETGEDA 111          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_RHIET (Nitrogen regulatory protein P-II OS=Rhizobium etli GN=glnB PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.166e-14
Identity = 37/96 (38.54%), Postives = 67/96 (69.79%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            ++AL  +GI+G+TV++V+G+G Q G TE + G+ ++   F+ K+K+EI V+ + V+  ++ I   A+TG+IGD +IF+  + + +R+RTGE   +A
Sbjct:   17 REALTAIGIQGLTVTEVKGYGRQKGHTEIYRGTVYAVS-FLPKLKIEIAVASELVDRAVEAIGASAKTGQIGDGKIFVYSIDHAVRIRTGETDSEA 111          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_CYACA (Nitrogen regulatory protein P-II OS=Cyanidium caldarium GN=glnB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.557e-13
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGER 692
            K  L+  G+ G+TV++V G G Q G  ER  G E+ + + + KVK+EIVV  + ++ +I+ I+    TGEIGD +IF+ PV +VIR+RT ++
Sbjct:   18 KVRLMTFGVPGITVTNVMGCGKQIGGIERSKGVEY-DSELIEKVKIEIVVMNEHIDELIEIIINAVWTGEIGDGKIFVSPVSSVIRIRTQDK 108          
The following BLAST results are available for this feature:
BLAST of DY260186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GLNB_BRAJA5.862e-1647.25Nitrogen regulatory protein P-II OS=Bradyrhizobium... [more]
GLNB1_METTH1.706e-1545.83Nitrogen regulatory protein P-II 1 OS=Methanobacte... [more]
GLNB_RHILV3.800e-1547.06Nitrogen regulatory protein P-II OS=Rhizobium legu... [more]
GLNB2_METTH8.465e-1544.79Nitrogen regulatory protein P-II 2 OS=Methanobacte... [more]
GLNB_RHOCA1.444e-1444.79Nitrogen regulatory protein P-II OS=Rhodobacter ca... [more]
GLNB_RHIET7.166e-1438.54Nitrogen regulatory protein P-II OS=Rhizobium etli... [more]
GLNB_CYACA3.557e-1342.39Nitrogen regulatory protein P-II OS=Cyanidium cald... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260186 ID=DY260186; Name=DY260186; organism=Citrus clementina; type=EST; length=897bp
TTAGTTGCCCGTCTCTTCCAAAAGAGTTTGACATTGTTCTTTTTCATTCC
AACATTTTTGCTGCTATTTATGAGCGATAGAAGGAACCCATATCATGATA
TCCTTATTTCATTAACCAATCGGGCTGGAGATGTAATTTTTTTCCAACAA
AAATTGGAGAGGTCTTGGATTTTCCTACTGTTGATGAGCACCTGACTGTA
TAACTTTCTGTTGATAGATGAAGAATTTTAAGTTGCATCTATTTAAGGAT
CGAGTTTCAGTAGGAAGGACATGCTTCCATCCAAAGAAATTAATTATTTT
AGCCCCATAAATTGAGTAAATATGTGTCCCTAAATCATTCGAAACCCTTC
AGATTATCATTTCTACCAAACATTTTATTCACATTATATTGGCACTATTT
TTGGTTTCTTTTGACAAAAAAGGCTTTGCTGAATATGGGTATCCGTGGTG
TCACGGTTTCTGATGTTCGAGGTTTTGGTGCTCAAGGTGGCTCAACAGAA
AGGCATGGTGGCTCTGAATTTTCTGAGGATAAATTTGTTGCTAAAGTGAA
GATGGAGATTGTGGTGAGCAAAGACCAGGTGGAAGGAGTAATTGATAAAA
TTATGGAGGAGGCCAGGACTGGAGAAATTGGTGACCGCCAGATTTTTTTG
GTACCTGTCCCAAATGTCATAAGAGTTCGAACTGGTGAACGAAGTGAAAA
AGCTGAAAGGAAGGCACGAGGATGGTCCGACCTATCCTCCGCCGTGTGAC
CCTGTACCGATTTGTCGTATGATTTGAAAACCAGATTAACATCCAAACCC
CCTTAGGTTTTAAAAGTTTTAGTCGCCATTATCCCCGTCCCCCCGGCGCC
TGATAAAAAAACAAGAATAAAAAACCTGGCTTCGGCCCCCCCCCCCA
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