DY260187
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 8.235e-52 Identity = 114/238 (47.90%), Postives = 147/238 (61.76%), Query Frame = 1 Query: 16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726 QR+G GS F+S +H +G ++ L++ + + L+GVV EI+HDPGR AP+ARV F + ++L IA EG+ GQ +Y G A + +GN LP+ IPEG V N+E GD G RA G YA+++S + D V+LPSG K CRA IG VAGGGR EKPL KAG AY+K++ + WP RGV MN V HP GG H H G +T R APPG+KVG ARRTG Sbjct: 8 QRRGKGSPTFRSPSHRFRGAVKYIPLNYTQ-DKTLRGVVEEIMHDPGRTAPVARVRFENGM-----EKLIIAPEGLLVGQEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHIAARRTG 236
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 1.076e-51 Identity = 116/239 (48.54%), Postives = 148/239 (61.92%), Query Frame = 1 Query: 16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726 QR+G GS +++S PA++P L L+G V E++HDPGR PLA + + E +I AAEGMY GQ + G A + GN+LPV IPEG V N+E GD G L RA G YA+I+ + + T ++LPSG K +P+ RA IG VAG GR EKPL KAG AY+K+ KP+ WP+VRGVAMN V HPHGGG+HQ +TV R+APPG+KVG AR TG Sbjct: 8 QRRGKGSPLYRSRPWLHPAPARYPPL----TPVTLRGRVVELVHDPGRWVPLAHIVLENG------DEFYIPAAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAMNAVNHPHGGGSHQSPSFPTTVSRNAPPGRKVGHIAARSTG 234
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3) HSP 1 Score: 203.371 bits (516), Expect = 1.835e-51 Identity = 114/243 (46.91%), Postives = 143/243 (58.85%), Query Frame = 1 Query: 1 RVIPPQRKGAG-SVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726 R I QR+G G S F++ +H K E L G V ++ HDP R AP+ARV F + L +A+EG+ G + G AT+ GN LP+ IPEG VCNVE H GD G ARA G A +++H + D T V+LPSG K + CRA IG VAGGGRTEKP KAGN +HK + + WP+VRGVAMN V+HP GGG QH G +V RDA PG+KVG ++RTG Sbjct: 3 RRIQGQRRGRGTSTFRAPSHRYKAELSHKRT---EDTDVLAGEVIDVEHDPARSAPVARVAFEDD-----DQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVGDIASKRTG 235
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.835e-51 Identity = 114/243 (46.91%), Postives = 143/243 (58.85%), Query Frame = 1 Query: 1 RVIPPQRKGAG-SVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726 R I QR+G G S F++ +H K E L G V ++ HDP R AP+ARV F + L +A+EG+ G + G AT+ GN LP+ IPEG VCNVE H GD G ARA G A +++H + D T V+LPSG K + CRA IG VAGGGRTEKP KAGN +HK + + WP+VRGVAMN V+HP GGG QH G +V RDA PG+KVG ++RTG Sbjct: 3 RRIQGQRRGRGTSTFRAPSHRYKAELSHKRT---EDTDVLAGEVIDVEHDPARSAPVARVAFEDD-----DQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVGDIASKRTG 235
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 2.396e-51 Identity = 112/238 (47.06%), Postives = 147/238 (61.76%), Query Frame = 1 Query: 16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726 QR+G GS F+S +H +G ++ L++ + + ++GVV EI+HDPGR AP+ARV F + ++L IA EG+ GQ +Y G A + +GN LP+ IPEG + N+E GD G RA G YA+++S + D V+LPSG K CRA IG VAGGGR EKPL KAG AY+K++ + WP RGV MN V HP GG H H G +T R APPG+KVG ARRTG Sbjct: 8 QRRGKGSPTFRSPSHRFRGAVKYIPLNYTQ-DKTIRGVVEEIMHDPGRTAPVARVKFENGM-----EKLIIAPEGLLVGQEIYIGPDAPVEIGNTLPLAKIPEGTYIYNIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHIAARRTG 236
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 3.129e-51 Identity = 108/242 (44.63%), Postives = 143/242 (59.09%), Query Frame = 1 Query: 1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726 R+I R +++ +H + + H ++G+V +I+HDP R AP+A V + +K+ +A EG Y GQ + CG A + GN LP+ SIPEG +CN+E G G ARASG Y ++++H D T V+LPSG K + C A IG VAGGGRTEKPL KAG +++K+R K WP+VRGVAMN V+HP GGG QH G TV R PPG+KVG ARRTG Sbjct: 4 RIISQNRGKGTPTYRAPSHRYRADIK----HIKFSGDLVRGIVEDIMHDPARTAPVALVRLENG-----EKQYVLATEGTYIGQEIACGPAAEIQPGNTLPLASIPEGMPICNIESKPGHGGQFARASGVYGILVAH--DVGATVVQLPSGEMKWLNPNCLATIGVVAGGGRTEKPLVKAGKSFYKYRSKAVKWPRVRGVAMNAVDHPFGGGGRQHPGRPKTVSRGTPPGRKVGSIAARRTG 234
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 3.129e-51 Identity = 109/238 (45.80%), Postives = 142/238 (59.66%), Query Frame = 1 Query: 16 QRKGAGSV-FKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726 Q +G G+ + S TH RKG ++ ER + G + +I+HDPGR +P+ARV + + ++ L + EGM + CG A + GNVLP+ +PEG V N+E GD G L R+ G YA +I+H D T +KLPSG K + CRA IG VAGGGR EKP+ KAG YH + K WP+VRGVAMN V+HP GGGN QH G +T+ R PG+KVG ARRTG Sbjct: 8 QNRGKGTPRYTSPTHKRKGAVKYRKFDESERKDKIIGTIIDILHDPGRSSPIARVRYDNG-----EERLILIPEGMKIKDTIECGISAEIKPGNVLPLGEVPEGIPVYNIETIPGDGGKLVRSGGCYAHVITH--DVSKTIIKLPSGHMKTLNPMCRATIGVVAGGGRKEKPITKAGKKYHAMKAKAVLWPRVRGVAMNAVDHPFGGGNTQHAGKPTTISRHTSPGRKVGHIAARRTG 238
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 9.105e-51 Identity = 112/238 (47.06%), Postives = 147/238 (61.76%), Query Frame = 1 Query: 16 QRKGAGSV-FKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726 QR G G+ +++ H R P ++PS + + +G V E+ HDPGR PLA + + + AAEGMYTGQ V G A + GN+LP+ +IPEG + NVE GD G LAR+ G YA+++ + ++ ++LPSG K + + RA IG AG GR EKPL KAGNAY+K++ K WP VRGVAMN V HPHGGGNHQ G+ +TV R+APPGQKVG AR TG Sbjct: 8 QRHGRGTPQWRNRGHLRVAPGRYPSPEVLKLDETYEGYVVELKHDPGRWVPLAHIVIPNVADFW-----IPAAEGMYTGQKVQIGPNAAPVNGNILPLYAIPEGTQIFNVEIRPGDGGKLARSGGAYAILVGKS--GNSAIIQLPSGKVKQVNAKARATIGIAAGAGRDEKPLLKAGNAYYKWKAKAKKWPVVRGVAMNAVNHPHGGGNHQSPGYPTTVARNAPPGQKVGHIAARCTG 238
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 9.105e-51 Identity = 111/243 (45.68%), Postives = 143/243 (58.85%), Query Frame = 1 Query: 1 RVIPPQRKGAG-SVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726 R I QR+G G S F++ +H K E + + G + +I HDP R AP+A V F + L +A EG+ G+ + G A + GN LP+R IPEG VCNVE VGD G ARASG A +++H D D ++LPSG K + C+A IG VAGGGRTEKP KAG +HK + + WP+VRGVAMN V+HP GGG QH G +V RDAPPG+KVG ++RTG Sbjct: 3 RRIQGQRRGRGTSTFRAPSHRYKAELSHKQ---SESDDTITGTIVDIEHDPARSAPVAAVEFDDG-----DRRLVLAPEGIRVGETMQIGVSAEIKPGNTLPLREIPEGVPVCNVESQVGDGGKFARASGTSAQLMTH--DRDVVVIELPSGETKRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVGDIASKRTG 235
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 2.028e-50 Identity = 106/238 (44.54%), Postives = 140/238 (58.82%), Query Frame = 1 Query: 13 PQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726 P + S FK+ H K FG+ ++G++ E++HDP R P+ RV F + ++ L +A EG+ G + CG A + GN LP+ IPEG +CN+E GD G AR+SG YA+I++H + T V++PSG K + CRA IG VAGGGRTEKP +AGN ++K K WP VRGVAMN V+HP GGG QH G TV R+ PPG+KVG ARRTG Sbjct: 15 PTYRATSSRFKADLEHIKT--------FGDET--IEGIITEVVHDPARNCPIIRVKFGNG-----EERLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSIAARRTG 235 The following BLAST results are available for this feature:
BLAST of DY260187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260187 ID=DY260187; Name=DY260187; organism=Citrus clementina; type=EST; length=1040bpback to top |